; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g0859 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0859
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationMC09:9760002..9760232
RNA-Seq ExpressionMC09g0859
SyntenyMC09g0859
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649895.1 hypothetical protein Csa_012205 [Cucumis sativus]3.21e-2768.92Show/hide
Query:  RMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        R+N S+ RM  N+DQ RG+KIFVGGL ++L E EFR+YFE  GQI DVVVM DSVTNRPRGFGF+TF+S+ESV+
Subjt:  RMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

XP_004141412.1 RNA-binding protein 1 [Cucumis sativus]2.38e-2670Show/hide
Query:  SSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        S+ RM  N+DQ RG+KIFVGGL ++L E EFR+YFE  GQI DVVVM DSVTNRPRGFGF+TF+S+ESV+
Subjt:  SSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

XP_022136959.1 RNA-binding protein 1-like [Momordica charantia]3.82e-3785.33Show/hide
Query:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        MNKSSNRM  N+DQ RGKKIFVGGLPSDL ENEF++YFEK GQI DVVVMQDSVTNRPRGFGFITFDSVESVN++
Subjt:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

XP_023524364.1 RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]1.21e-2473.77Show/hide
Query:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        DQFRG+KIFVGGL ++L E++F+NYFEK G++ DVVVM+DSVT RPRGFGFITFDSV+SV+
Subjt:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

XP_038898856.1 RNA-binding protein 1-like [Benincasa hispida]2.61e-2772.86Show/hide
Query:  SSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        S+ RM  N+DQ RG+KIFVGGL ++L E+EF+NYFEK G+I DVVVM DSVTNRPRGFGFITF+SVESV+
Subjt:  SSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

TrEMBL top hitse value%identityAlignment
A0A067KZE7 Uncharacterized protein6.98e-2470.77Show/hide
Query:  GKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        G  +D FR KKIFVGGL S L E +F+NYFE+ G+I+DVVVMQDS TNRPRGFGF+TFDS ESV+
Subjt:  GKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

A0A0A0L563 RRM domain-containing protein1.15e-2670Show/hide
Query:  SSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        S+ RM  N+DQ RG+KIFVGGL ++L E EFR+YFE  GQI DVVVM DSVTNRPRGFGF+TF+S+ESV+
Subjt:  SSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

A0A6J1C724 RNA-binding protein 1-like1.85e-3785.33Show/hide
Query:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        MNKSSNRM  N+DQ RGKKIFVGGLPSDL ENEF++YFEK GQI DVVVMQDSVTNRPRGFGFITFDSVESVN++
Subjt:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

A0A6J1FS87 RNA-binding protein 1-like5.88e-2573.77Show/hide
Query:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        DQFRG+KIFVGGL ++L E++F+NYFEK G++ DVVVM+DSVT RPRGFGFITFDSV+SV+
Subjt:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

A0A6J1J2K5 RNA-binding protein 1-like5.88e-2573.77Show/hide
Query:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        DQFRG+KIFVGGL ++L E++F+NYFEK G++ DVVVM+DSVT RPRGFGFITFDSV+SV+
Subjt:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

SwissProt top hitse value%identityAlignment
O94432 Uncharacterized RNA-binding protein C660.155.6e-1246.67Show/hide
Query:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESV
        +Q +  K+FVGG+P D  E EFRN+F + G+++D  +M D  T RPRGFGF+T+++  +V
Subjt:  DQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESV

Q8W034 Heterogeneous nuclear ribonucleoprotein 12.7e-1448.65Show/hide
Query:  NKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        N +++R        + KKIFVGGLP  L + EFR YFE  G + DV +M D  TNRPRGFGF++FDS ++V+ +
Subjt:  NKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

Q96EP5 DAZ-associated protein 11.6e-1145.07Show/hide
Query:  KSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        K   + G   D  +  KIFVGG+P +  E E R YF+K G + +VV++ D+   RPRGFGFITF+  +SV+
Subjt:  KSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

Q9C652 RNA-binding protein 17.5e-1755.26Show/hide
Query:  RMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        +MN     M  N    R KKIFVGGL S+  E EF++YFE+ G+  DVVVM D VTNRPRGFGF+T+DS +SV  +
Subjt:  RMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

Q9JII5 DAZ-associated protein 11.6e-1145.07Show/hide
Query:  KSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        K   + G   D  +  KIFVGG+P +  E E R YF+K G + +VV++ D+   RPRGFGFITF+  +SV+
Subjt:  KSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

Arabidopsis top hitse value%identityAlignment
AT1G58470.1 RNA-binding protein 15.4e-1855.26Show/hide
Query:  RMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        +MN     M  N    R KKIFVGGL S+  E EF++YFE+ G+  DVVVM D VTNRPRGFGF+T+DS +SV  +
Subjt:  RMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.4e-1860Show/hide
Query:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        M+  S   G N    R KKIFVGGLPS + E EF+NYF++ G I DVVVM D  T RPRGFGFITFDS ESV+ +
Subjt:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

AT4G26650.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.4e-1860Show/hide
Query:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI
        M+  S   G N    R KKIFVGGLPS + E EF+NYF++ G I DVVVM D  T RPRGFGFITFDS ESV+ +
Subjt:  MNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI

AT5G55550.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.9e-1767.24Show/hide
Query:  RGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        R KKIFVGGLPS + E EF+NYF++ G I DVVVM D  T RPRGFGFITFDS ++V+
Subjt:  RGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN

AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein5.9e-1767.24Show/hide
Query:  RGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN
        R KKIFVGGLPS + E EF+NYF++ G I DVVVM D  T RPRGFGFITFDS ++V+
Subjt:  RGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAGGATGAATAAGAGTAGTAATAGAATGGGAAAAAACCATGATCAGTTCAGAGGCAAAAAGATTTTTGTAGGAGGTTTACCATCTGATTTAGTTGAGAATGAGTTCAG
AAACTACTTCGAAAAGTCAGGTCAGATAATAGATGTAGTTGTGATGCAAGATAGTGTAACAAACCGTCCTAGAGGATTTGGGTTCATCACATTTGATTCAGTGGAATCTG
TAAACTTTATT
mRNA sequenceShow/hide mRNA sequence
ATTAGGATGAATAAGAGTAGTAATAGAATGGGAAAAAACCATGATCAGTTCAGAGGCAAAAAGATTTTTGTAGGAGGTTTACCATCTGATTTAGTTGAGAATGAGTTCAG
AAACTACTTCGAAAAGTCAGGTCAGATAATAGATGTAGTTGTGATGCAAGATAGTGTAACAAACCGTCCTAGAGGATTTGGGTTCATCACATTTGATTCAGTGGAATCTG
TAAACTTTATT
Protein sequenceShow/hide protein sequence
IRMNKSSNRMGKNHDQFRGKKIFVGGLPSDLVENEFRNYFEKSGQIIDVVVMQDSVTNRPRGFGFITFDSVESVNFI