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MC09g0919 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0919
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationMC09:13172781..13173033
RNA-Seq ExpressionMC09g0919
SyntenyMC09g0919
Gene Ontology termsGO:0006139 - nucleobase-containing compound metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443244.1 PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo]2.40e-1952.33Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

XP_011652174.1 Werner Syndrome-like exonuclease [Cucumis sativus]2.40e-1952.33Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

XP_022147750.1 Werner Syndrome-like exonuclease [Momordica charantia]1.86e-2361.63Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRE-TSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC D +CLIFQLIHAS+IP  L D+  DESF F+GVGI E        YGL V   VDLR LAEN M +GDL NAGLKGL KE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRE-TSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

XP_038903327.1 Werner Syndrome-like exonuclease isoform X2 [Benincasa hispida]4.18e-1953.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QLIH  +IP  LF++ ++ES  F+GVGI E +   +  YGLKV K VDLR LAE++  + DL NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

XP_038906336.1 Werner Syndrome-like exonuclease [Benincasa hispida]6.85e-1953.49Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGI-RETSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLIFQLIH S+IP  L D+ +D++F F+GVGI ++       Y LKV   VDLR LA N ME+ DL NAGLK LG+E++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGI-RETSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

TrEMBL top hitse value%identityAlignment
A0A0A0LBN3 3'-5' exonuclease domain-containing protein1.16e-1952.33Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

A0A1S3B738 Werner Syndrome-like exonuclease1.16e-1952.33Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

A0A5A7UI20 Werner Syndrome-like exonuclease1.16e-1952.33Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

A0A6J1D107 Werner Syndrome-like exonuclease9.02e-2461.63Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRE-TSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC D +CLIFQLIHAS+IP  L D+  DESF F+GVGI E        YGL V   VDLR LAEN M +GDL NAGLKGL KE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRE-TSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

E5GBP0 3'-5' exonuclease1.16e-1952.33Show/hide
Query:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG
        LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR LAE++  +G+L NAGLK LGKE++G
Subjt:  LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAATCCG
CGAGACGTCAACAAGCTCGGCTAGGTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAGGAT
TGAAGGGATTGGGGAAAGAGATTATTGGA
mRNA sequenceShow/hide mRNA sequence
CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAATCCG
CGAGACGTCAACAAGCTCGGCTAGGTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAGGAT
TGAAGGGATTGGGGAAAGAGATTATTGGA
Protein sequenceShow/hide protein sequence
LCSDHQCLIFQLIHASKIPLFDYFDDESFPFIGVGIRETSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG