; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g0966 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g0966
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationMC09:14854177..14861196
RNA-Seq ExpressionMC09g0966
SyntenyMC09g0966
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]2.66e-6283.47Show/hide
Query:  SSLKGFCIGGFWIEGGGEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYV
        SSL+GF +   W     +MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHW+VAEILRKARIY 
Subjt:  SSLKGFCIGGFWIEGGGEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYV

Query:  PPSQDSQTSSDKSKAAAPSTT
        PPSQD Q+ SDKS  +APSTT
Subjt:  PPSQDSQTSSDKSKAAAPSTT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]1.21e-6092.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHW+VAEILRKARIY PPSQD Q+ SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]3.46e-6092.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_022155383.1 uncharacterized protein LOC111022528 [Momordica charantia]3.90e-66100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

XP_038891417.1 30S ribosomal protein S17-like [Benincasa hispida]3.46e-6092.16Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRV+LDPSRPLSKHKHW+VAEILRKARIY PPS+D+Q  SDKSKA+AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  ST
        ST
Subjt:  ST

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic1.67e-6092.23Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic4.14e-6091.35Show/hide
Query:  EMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAA
        +MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +A
Subjt:  EMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAA

Query:  PSTT
        PSTT
Subjt:  PSTT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic4.14e-6091.35Show/hide
Query:  EMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAA
        +MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT SDKS  +A
Subjt:  EMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAA

Query:  PSTT
        PSTT
Subjt:  PSTT

A0A6J1DMT5 30S ribosomal protein S17, chloroplastic1.89e-66100Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic2.78e-5990.29Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHK W+VAEILRKARIY PPSQ++Q  SDK K +AP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A5D5G4 30S ribosomal protein S173.9e-2056.47Show/hide
Query:  IEGGGEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKAR
        +EG G  K + G VVSNKM K+VVVAV+ L  H LY R ++RT KF AHDE N C IGD+VK+  +RPLSK K W V EIL + +
Subjt:  IEGGGEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKAR

A7HM43 30S ribosomal protein S173.3e-1953.01Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPP
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K W+V  IL ++++   P
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPP

A8ZV66 30S ribosomal protein S173.3e-1955Show/hide
Query:  GEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA
        G  +Q  G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GD+V +  SRPLS+ KHW V  ++ KA
Subjt:  GEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA

B1I1J7 30S ribosomal protein S173.6e-2164Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+HK W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARI

Q8R7W3 30S ribosomal protein S176.7e-2056.25Show/hide
Query:  GEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA
        G+ K  +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  GEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein1.2e-3570.59Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPSRPLSK+KHW+VAEI++KARIY P +  +  S+  S ++A 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

Query:  ST
        +T
Subjt:  ST

AT1G79850.1 ribosomal protein S175.0e-1041.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K ++   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein5.8e-3571Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPSRPLSKHKHW+V+EI++KARIY P +  +  +S  S A  P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAP

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein1.4e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWMVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKHKHWMVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCAGCTTAAAGGGTTTTTGTATTGGGGGTTTTTGGATCGAAGGAGGGGGTGAGATGAAGCAGGTAGTGGGAATGGTGGTCTCGAACAAAATGCAGAAATCGGTGGTAGT
TGCGGTGGATAGGTTGTTCTATCACAAACTCTACAATCGCTACGTCAAGCGCACTTCCAAGTTCATGGCTCATGATGAGAACAACCAGTGCAATATTGGTGATCGAGTTA
AATTAGACCCGTCTAGGCCATTAAGCAAGCATAAACATTGGATGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACGTACCACCATCACAAGATAGCCAGACTTCTTCA
GACAAAAGCAAAGCAGCAGCTCCTTCAACCACTTAA
mRNA sequenceShow/hide mRNA sequence
AGCAGCTTAAAGGGTTTTTGTATTGGGGGTTTTTGGATCGAAGGAGGGGGTGAGATGAAGCAGGTAGTGGGAATGGTGGTCTCGAACAAAATGCAGAAATCGGTGGTAGT
TGCGGTGGATAGGTTGTTCTATCACAAACTCTACAATCGCTACGTCAAGCGCACTTCCAAGTTCATGGCTCATGATGAGAACAACCAGTGCAATATTGGTGATCGAGTTA
AATTAGACCCGTCTAGGCCATTAAGCAAGCATAAACATTGGATGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACGTACCACCATCACAAGATAGCCAGACTTCTTCA
GACAAAAGCAAAGCAGCAGCTCCTTCAACCACTTAAGGGGTAACTACTCCAGACCACATCCGAGAAGATACAGGATCAAGCAGTTTGCTACACATTGGAAACCGAAGACC
GAAAGCTCTCGAAAAACGACTATTGTAAACAGTATGTTTCTCTTGTCAAGGATTTGAATTTGAAGTAGTTGCATTACCATTATGTTTTATTCTGTTTAGTGTAAACCTTT
TTGTTCCTATGAGCACAATCTTTTGTGAGCTGGGAAGTGCACAATAACATATCCAAAAGCTTTCTTCCACAAGTAGGTATAGGCACTCAGAATATATTATTTAAGATTCT
GTTATATAAAG
Protein sequenceShow/hide protein sequence
SSLKGFCIGGFWIEGGGEMKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKHWMVAEILRKARIYVPPSQDSQTSS
DKSKAAAPSTT