; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g1250 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g1250
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionthioredoxin-like protein YLS8
Genome locationMC09:18624206..18626601
RNA-Seq ExpressionMC09g1250
SyntenyMC09g1250
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI32104.1 hypothetical protein PRUPE_1G348600 [Prunus persica]1.14e-3780.23Show/hide
Query:  ICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +C + EMD VLASVAET+KNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDI+E V
Subjt:  ICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

XP_019058627.1 PREDICTED: thioredoxin-like protein YLS8 [Tarenaya hassleriana]4.12e-3785.19Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

XP_022139325.1 thioredoxin-like protein YLS8 [Momordica charantia]2.69e-4989.47Show/hide
Query:  HILAHESVICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV
        HIL H   +     MDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV
Subjt:  HILAHESVICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV

XP_038892359.1 thioredoxin-like protein YLS8 isoform X3 [Benincasa hispida]2.56e-3786.42Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        EMD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

XP_038892360.1 thioredoxin-like protein YLS8 isoform X4 [Benincasa hispida]2.56e-3786.42Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        EMD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

TrEMBL top hitse value%identityAlignment
A0A0L9UU99 Uncharacterized protein2.83e-3783.95Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDI+E V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A251R7T9 Uncharacterized protein5.53e-3880.23Show/hide
Query:  ICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +C + EMD VLASVAET+KNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDI+E V
Subjt:  ICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A2I0WZB2 Uncharacterized protein2.33e-3778.82Show/hide
Query:  CTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        C + +MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD ST+MFFFRNKHIM +  G GNN+KINWA+KDKQEFIDI+E V
Subjt:  CTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A5E4ELJ0 PREDICTED: thioredoxin5.53e-3880.23Show/hide
Query:  ICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +C + EMD VLASVAET+KNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDI+E V
Subjt:  ICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

A0A6J1CC08 thioredoxin-like protein YLS81.30e-4989.47Show/hide
Query:  HILAHESVICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV
        HIL H   +     MDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV
Subjt:  HILAHESVICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A6.7e-2774.07Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +MD VL S+AE +KNFAVIYLVDI EVPDFN MYELYD  TVMFFFRNKHIM +  G GNN+KINWA++DKQE +DIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

P83877 Thioredoxin-like protein 4A6.7e-2774.07Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +MD VL S+AE +KNFAVIYLVDI EVPDFN MYELYD  TVMFFFRNKHIM +  G GNN+KINWA++DKQE +DIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

P87215 Mitosis protein dim12.6e-2365.43Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        + D VL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+M +  G GNN+KINW L+DKQE IDIIE +
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

Q553S5 Thioredoxin-like protein 4A homolog3.4e-2365.43Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        + D +LAS+AE +KN AVIY+VDI EVPD N+MYELYD    MFF+RNKHIM +  G GNN+KINWAL +KQ+ IDIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

Q9FE62 Thioredoxin-like protein YLS87.7e-3185.19Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV

Arabidopsis top hitse value%identityAlignment
AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP5.4e-3285.19Show/hide
Query:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV
        +MD VLASVAETIKNFAVIYLVDI EVPDFN MYELYD STVMFFFRNKHIM +  G GNN+KINWALKDKQEFIDIIE V
Subjt:  EMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNKHIMRLIFGAGNNDKINWALKDKQEFIDIIEDV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATTCTTTTGCACATGAGGGAGCTTACTGCTGTGAGGATTCGAACTCACGACCTCGGTGCCTTGTGTGTGTGGCTTCTCTATTATTGTCATGTGTTCTGCTGCAACTGTG
CTCCTTAGCCGTTTTCTATAATCAGACCTTCCTACATATTTTGGCACATGAATCTGTCATTTGTACCAGACATGAGATGGATGGAGTGTTGGCCTCAGTTGCCGAGACGA
TTAAGAACTTTGCAGTAATATATCTTGTCGATATCATAGAGGTTCCTGATTTCAACGCAATGTACGAGCTGTATGATCATTCCACTGTCATGTTCTTCTTTAGGAACAAG
CACATAATGAGATTGATCTTTGGTGCTGGAAACAACGATAAGATAAACTGGGCACTCAAGGATAAGCAGGAGTTCATTGATATCATTGAAGACGTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
TATTCTTTTGCACATGAGGGAGCTTACTGCTGTGAGGATTCGAACTCACGACCTCGGTGCCTTGTGTGTGTGGCTTCTCTATTATTGTCATGTGTTCTGCTGCAACTGTG
CTCCTTAGCCGTTTTCTATAATCAGACCTTCCTACATATTTTGGCACATGAATCTGTCATTTGTACCAGACATGAGATGGATGGAGTGTTGGCCTCAGTTGCCGAGACGA
TTAAGAACTTTGCAGTAATATATCTTGTCGATATCATAGAGGTTCCTGATTTCAACGCAATGTACGAGCTGTATGATCATTCCACTGTCATGTTCTTCTTTAGGAACAAG
CACATAATGAGATTGATCTTTGGTGCTGGAAACAACGATAAGATAAACTGGGCACTCAAGGATAAGCAGGAGTTCATTGATATCATTGAAGACGTGGTTTAGTTACTCTT
CAACCAATATCGCTACTAAGATGTCGTGCAAGTTCTTGTTGACGATGTTAGATTTAAGACATTGCATCTCATTTTGTGACTTTGTGTTATGACTTCTTGAAACACAGGAT
CATTGATGAAACTCTGAAGAGGGTCTATAGCTGTTTCTGATATGAAGTCCTTTTATTATGGTCAATAAGGTTGAATAATTTGTTTTCTTGTCTATTGATGATGTATTGGA
ATATAACAAACAGATATGAGCAGATACATAATGTTTATTTACCATATCCATTTGTACTTTTCAATTCTTTTGAAGTAACGATATATGCAGCTTCTACTTTCTGTGTAGTT
TTTAAGGCCTAATCTTTCCTGCAATCATTTCTACCGTTCCCATCACTGCCATTCCAATGACATACCAAGTGATGCCTGTCAGTGTAGTCTGCATCCAGTGACTGTTTACT
AACTCCAGTGCAAGAGAGCCCCCAATGTGTTCCTTCAAGCTGCTGGCACCGTCGTCTCTCGCCATTAGCTGAATTACTGCAGTTGCAATCATCGATATCGACACCGGTAT
TCCCCATCTCATGGGGCTAATATGACCACCATCACCCACTTCAAAACCAAGGTCTTTTGATTCTCTGTTAGTTTTGGTCTCCACTCTTGGCTTTGAGATTGTGCTGTTCA
GAGTTTGAGTTGTGGCTGGAAGTGCAAGAGTGGTAGGAACCCAGTAATCATTGTTGTATATGTATTGTTTTGCTGCAGTTCTTGTTCTGCCTTCAAGTTTTTCCCTGGCT
TGTTTCCTTGCAGTAGCAGCAGCTTGAAGTTTGCTGATTTCTGGTGTGGATTTGCTGCCTATGCGCATCAGGTTTTGGCTGTGCTTGGGTCCTGGTCCAGCCGGGGTGGC
TGTCTGCCAAAACAGCCAATTTGAGATTGATCTGATAGTTTGAATTGCTGCCAACTGCGCTTCGCTTTCGAAGGTCGTCCCCTAAAAACCGATCCACACGACTTGGCTAC
ATCAAAATTTTGAGCTGCTTTTCAAATTGTTAGCATATGGTATCTTTGAGTCTAACCTTGAAATGATCTTTGGTAGTCTTCTCCATGGCCTCCTTGAATCTGGTTTGGAA
CTTCTTCACGTCTGCGAAAATGTTCGACACTCGTTCGCCAGCAGCGTTGCCCATTCCCACTCGTACGTTTCCACGCGGTTGCTTTGACATTAGAAACTCCAGAGCTGCCA
AGTCTGACCTTTCCACCATCCTGGAGAGACAGAGATAGATAGAGGAAATTTGAATGCTTAACAAGTTTAAGAGTTTGATTAAGCATAGCACTCACGAAATGCAGTCAACT
GGGCAAGCTTCAATGGCTTCCATAACTTTATGTTCAGGATCAGCCCACTGTGCCACAACTCTAGCTCTCCCATAAACTGACTCAACAGCAAAAGTTTTCCCAGCAAATAA
AGCACATTTCAAGCAGCCAATGCACTTCACTTCGTCTACAAAAACCGCTCGTTGTTCGTTTTCCGTTCCCAACCATACTGAATAAACTGGCTTCCCTGTGTAACCTCGAA
GTTCTGCCATTTTTGCTTGTTCC
Protein sequenceShow/hide protein sequence
YSFAHEGAYCCEDSNSRPRCLVCVASLLLSCVLLQLCSLAVFYNQTFLHILAHESVICTRHEMDGVLASVAETIKNFAVIYLVDIIEVPDFNAMYELYDHSTVMFFFRNK
HIMRLIFGAGNNDKINWALKDKQEFIDIIEDVV