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MC09g1312 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g1312
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSigma factor binding protein 1
Genome locationMC09:19211224..19211922
RNA-Seq ExpressionMC09g1312
SyntenyMC09g1312
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.35e-5869.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL
        RLV+G IE++ YQSS+APP+DL+++NFDA+FA+MF  FLHDSS TQT+MPG + L
Subjt:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL

XP_022139181.1 uncharacterized protein LOC111010149 [Momordica charantia]8.83e-100100Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
        LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Subjt:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL

XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]3.44e-5969.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL
        RLV+G IE++ YQSS+APP+DL+++NFDA+FA+MF  FLHDSS TQT+MPG + L
Subjt:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL

XP_022966872.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]1.97e-5869.03Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL
        RLV+G IE++ YQSS+APP+DL++QNFDA+FA+MF  FLH+SS TQT+MPG + L
Subjt:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]4.88e-5969.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL
        RLV+G IE++ YQSS+APP+DL++QNFDA+FA+MF  FLH+SS TQT+MPG + L
Subjt:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL

TrEMBL top hitse value%identityAlignment
A0A6J1CBX0 uncharacterized protein LOC1110101494.27e-100100Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
        LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL
Subjt:  LVSGNIESSYQSSIAPPDDLILQNFDANFADMFHGFLHDSSTQTQMPGLALL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like1.67e-5969.68Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  +KQ+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL
        RLV+G IE++ YQSS+APP+DL+++NFDA+FA+MF  FLHDSS TQT+MPG + L
Subjt:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like2.51e-4569.57Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        MDVIG+K  K  R+KKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI    AADRN      S+AFLD+Q+L   DD+ IDRD  HR
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESS-YQSSIAPP-DDLILQNFDANFADMFHGF
        LV+G IE++ YQS +APP DD +LQNFDA+F +M HGF
Subjt:  LVSGNIESS-YQSSIAPP-DDLILQNFDANFADMFHGF

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like9.55e-5969.03Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH
        MD+  ++Q+K R  K +AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIAAAA++DRN+LQ S+SA AFLD+QLL   DDD  D D  H
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSA-AFLDHQLLCDADDDQIDRDNHH

Query:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL
        RLV+G IE++ YQSS+APP+DL++QNFDA+FA+MF  FLH+SS TQT+MPG + L
Subjt:  RLVSGNIESS-YQSSIAPPDDLILQNFDANFADMFHGFLHDSS-TQTQMPGLALL

D1MWZ4 Sigma factor binding protein 19.38e-4563.29Show/hide
Query:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR
        M+V G+KQAK R  K +AADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL  A+AA+DRN LQ S+SA F D+QLL   DDD +       
Subjt:  MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHR

Query:  LVSGNIESS-YQSSIA---PPDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL
         V+G +E++ Y+SS+A   PPDDL +L N DA+F  MFHGF  DS T Q +MPGL  L
Subjt:  LVSGNIESS-YQSSIA---PPDDL-ILQNFDANFADMFHGFLHDSST-QTQMPGLALL

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic4.5e-0442.11Show/hide
Query:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA
        + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I + ++ D N   P+ + A
Subjt:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein9.2e-0557.5Show/hide
Query:  RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        R+S  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  RRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 13.2e-0542.11Show/hide
Query:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA
        + RK  K ++   S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+  +   E I + ++ D N   P+ + A
Subjt:  IGRKQAKIRRSKKSA-ADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCCCTGTTTCACTTTCATTAGGAATTTTCCTTTCTCATCTTTCCCCCAAATTTTCAAACCCACCACTTTCCCGGAAACCGCCTTGTTTGTTTCCCAAGAAAAT
TTCCCCATTCCGTACATCCTTATAAATCCACCACCGCACACTTCCATCCTTCCACTCAAAAACCTAGCTATCTATAACCTCCATAAATCTGCAATTTCAAAAATA
AACAAAACAAAAAGGAAAATTTGTCCGATTCCGATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTC
TACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTG
ATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGAT
CGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTT
GCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCCGGGTTTGGCTCTACTG
mRNA sequenceShow/hide mRNA sequence
TTCCCCTGTTTCACTTTCATTAGGAATTTTCCTTTCTCATCTTTCCCCCAAATTTTCAAACCCACCACTTTCCCGGAAACCGCCTTGTTTGTTTCCCAAGAAAAT
TTCCCCATTCCGTACATCCTTATAAATCCACCACCGCACACTTCCATCCTTCCACTCAAAAACCTAGCTATCTATAACCTCCATAAATCTGCAATTTCAAAAATA
AACAAAACAAAAAGGAAAATTTGTCCGATTCCGATGGATGTCATCGGCAGAAAACAGGCGAAGATCAGAAGAAGCAAGAAATCGGCCGCCGATTTCAAAGTCGTC
TACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCAGATCTCTCGTCCAGAAGCTCACCGGCCAGGACTCCGACGCCGAGCGCTTCATGGAGCTG
ATCGCCGCCGCCGCCGCCGCCGATCGGAATCATCTTCAGCCATCGTCGTCGGCGGCGTTCCTCGACCACCAACTCCTCTGCGACGCCGACGACGATCAAATCGAT
CGCGATAATCATCACCGTCTCGTGTCTGGTAACATCGAATCGTCGTATCAATCGTCGATTGCTCCGCCGGATGATTTGATTTTGCAGAACTTCGATGCGAATTTT
GCAGACATGTTCCATGGCTTTTTGCACGATTCTTCTACACAAACTCAGATGCCGGGTTTGGCTCTACTG
Protein sequenceShow/hide protein sequence
FPCFTFIRNFPFSSFPQIFKPTTFPETALFVSQENFPIPYILINPPPHTSILPLKNLAIYNLHKSAISKINKTKRKICPIPMDVIGRKQAKIRRSKKSAADFKVV
YISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIAAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIESSYQSSIAPPDDLILQNFDANF
ADMFHGFLHDSSTQTQMPGLALL