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MC09g1431 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g1431
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationMC09:20368555..20369078
RNA-Seq ExpressionMC09g1431
SyntenyMC09g1431
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]9.78e-5685.85Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAV QV +SDGGVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIINVEH TDFGNTFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+FL
Subjt:  FKSIFL

XP_022150618.1 replication protein A 14 kDa subunit B-like [Momordica charantia]5.90e-69100Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        FKSIFL
Subjt:  FKSIFL

XP_022988152.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]7.76e-5683.02Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAV QV +SD GVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIINVEH TDFG  FDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+FL
Subjt:  FKSIFL

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.32e-5783.96Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAV QV +SDGGVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIINVEH TDFG TFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]9.44e-5781.13Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+ GLP VPLMNFVEV+GIAE+NKIINVEH TDFG TFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein1.03e-5378.3Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIAESNK I VE  TDFG TFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

A0A1S3BGM8 replication protein A 14 kDa subunit B-like5.34e-5679.25Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIA+SNK INVEH TDFG TFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

A0A5A7SU42 Replication protein A 14 kDa subunit B-like5.34e-5679.25Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIA+SNK INVEH TDFG TFD +SYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+F+
Subjt:  FKSIFL

A0A6J1D9X1 replication protein A 14 kDa subunit B-like2.86e-69100Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        FKSIFL
Subjt:  FKSIFL

A0A6J1JC99 replication protein A 14 kDa subunit B-like3.76e-5683.02Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTSNPAVF N ELL +H GRKIRAV QV +SD GVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIINVEH TDFG  FDAQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+S+FL
Subjt:  FKSIFL

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.8e-2956.6Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTS+PA FVN  LL+ +IG+K+RAV QV +SD G V GKSTD+Q++ V G P+ PL  ++EVIGIAE++  I  E  T+FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+ +F+
Subjt:  FKSIFL

Q9LXK1 Replication protein A 14 kDa subunit A1.3e-2757.01Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANG
        MDTS+P+ FVN  LL+  IG+K+R V QVT S+ G V GKSTD+ ++ V G  P  PL  ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANG
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANG

Query:  EFKSIFL
        EFK +F+
Subjt:  EFKSIFL

Q9SDK9 Replication protein A 14 kDa subunit1.9e-2650Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTS PA FVN E+LK+ +GR++R V Q  + +GG++ G+STD  +LT+ G    P+ ++VE+IGIAE N+ I  E  TDFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
         K +FL
Subjt:  FKSIFL

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein9.3e-2957.01Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANG
        MDTS+P+ FVN  LL+  IG+K+R V QVT S+ G V GKSTD+ ++ V G  P  PL  ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANG
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANG

Query:  EFKSIFL
        EFK +F+
Subjt:  EFKSIFL

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein9.3e-2957.01Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANG
        MDTS+P+ FVN  LL+  IG+K+R V QVT S+ G V GKSTD+ ++ V G  P  PL  ++EVIGIAES+  I  E  T+FGNTFD Q+YN+LC+LANG
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHG-LPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANG

Query:  EFKSIFL
        EFK +F+
Subjt:  EFKSIFL

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.3e-3056.6Show/hide
Query:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE
        MDTS+PA FVN  LL+ +IG+K+RAV QV +SD G V GKSTD+Q++ V G P+ PL  ++EVIGIAE++  I  E  T+FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGE

Query:  FKSIFL
        F+ +F+
Subjt:  FKSIFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTTTTCAAGTTACCAAAAGTGATGGTGGAGTTGT
CACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCA
ATGTTGAACATTCGACGGACTTTGGAAACACATTTGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG
mRNA sequenceShow/hide mRNA sequence
ATGGATACCTCAAACCCTGCAGTTTTTGTCAACGCTGAATTATTGAAATTGCACATCGGAAGAAAGATTCGAGCAGTTTTTCAAGTTACCAAAAGTGATGGTGGAGTTGT
CACAGGAAAATCTACGGATGAACAAGAGTTGACTGTACATGGCTTGCCCAAAGTCCCTCTCATGAATTTTGTCGAGGTGATTGGTATCGCTGAGAGCAACAAGATCATCA
ATGTTGAACATTCGACGGACTTTGGAAACACATTTGATGCACAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATTCAAAAGTATATTTCTG
Protein sequenceShow/hide protein sequence
MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNFVEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL