; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g1492 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g1492
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionocticosapeptide/Phox/Bem1p (PB1) domain-containing protein
Genome locationMC09:20801981..20802412
RNA-Seq ExpressionMC09g1492
SyntenyMC09g1492
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032060.1 hypothetical protein SDJN02_06103, partial [Cucurbita argyrosperma subsp. argyrosperma]1.63e-8897.22Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFP KPDVSQSIGPILESS SSEDWFLNALNGAG LNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

XP_004135079.1 RNA polymerase II degradation factor 1 [Cucumis sativus]7.18e-9097.92Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFPIKPDVSQSIGPILESS SS+DWFLNALNGAGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

XP_008446641.1 PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo]4.89e-9097.92Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFPIKPDVSQSIGPILESS SS+DWFLNALNGAGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

XP_022956700.1 putative uncharacterized protein DDB_G0268364 isoform X2 [Cucurbita moschata]1.10e-8796.53Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFP KPDVSQSIGPILESS SSEDWFLNALNGAG LNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

XP_038892018.1 putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispida]2.75e-9098.61Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFPIKPDVSQSIGPILESS SSEDWFLNALNGAGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

TrEMBL top hitse value%identityAlignment
A0A0A0KWH3 PB1 domain-containing protein3.48e-9097.92Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFPIKPDVSQSIGPILESS SS+DWFLNALNGAGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

A0A1S3BF26 RNA polymerase II degradation factor 12.37e-9097.92Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFPIKPDVSQSIGPILESS SS+DWFLNALNGAGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

A0A5A7SVC4 RNA polymerase II degradation factor 12.37e-9097.92Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFPIKPDVSQSIGPILESS SS+DWFLNALNGAGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

A0A6J1GYH7 PB1 domain-containing protein5.32e-8896.53Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFP KPDVSQSIGPILESS SSEDWFLNALNGAG LNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

A0A6J1HQW4 RNA polymerase II degradation factor 1-like7.87e-8896.53Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLFP KPDVSQSIGPILESS SSEDWFLNALNGAG LNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01190.1 Octicosapeptide/Phox/Bem1p family protein1.4e-5675Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        +LR MCSYGGHI+PRPHDK+LCY+ G+TRIVVVDR++SL  L ARLS TLL+GR FTLKYQLP+EDLDSLISVTTDEDL+NMI+EYDRT S S+  + KP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
        SRLRLFLF  KP+ +QS+G ILESS  S+DWFLNALN AGLLNR
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

AT3G18230.1 Octicosapeptide/Phox/Bem1p family protein9.6e-4562.5Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        +LRLMCS+GGHI+PRPHDK+L Y  GETRIVVVDR  SLS L +RLS  LLNGR FTLKYQLP+EDLDSL+++TTDEDLENMI+EYDR AS+++      
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR
         RLRLFLF  K + + ++G +L+ +  S+ WF++ALN +GLL R
Subjt:  SRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

AT4G05150.1 Octicosapeptide/Phox/Bem1p family protein1.3e-3353.79Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRP-FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAK
        R+R MC++GG I+PRP D  LCYV G+ R+V V RHT+ + L ++L+K  L+G+   ++KYQLPNEDLD+LISV+TDED+ENM+DEYDR A N  NP A 
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRP-FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAK

Query:  PSRLRLFLF-------PIKPDVSQSIGPILESSNSSEDWFLNALN
         SRLRLFLF             + SI  +L+SS + E WFL+ALN
Subjt:  PSRLRLFLF-------PIKPDVSQSIGPILESSNSSEDWFLNALN

AT5G09620.1 Octicosapeptide/Phox/Bem1p family protein3.4e-2648.92Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLL---NGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPT
        +++LMCSYGG I PRPHD  L YV G+T+I+ VDR      L ++LS       +G   + KYQLP EDLD+LISVT DEDLE+M+ EYDR    S+   
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLL---NGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPT

Query:  AKPSRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNAL
         KP+R+RLFLFP  P +S   G   E S  S+   LN +
Subjt:  AKPSRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNAL

AT5G64430.1 Octicosapeptide/Phox/Bem1p family protein2.6e-2649.65Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTL----LNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP
        +++ MCSYGG I PRPHD  L YV GET+I+ VDR      L ++LS         G   T KYQLP EDLD+LISVT D+DLE+M+ EYDR    SS  
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTL----LNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP

Query:  TAKPSRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALN
          KP+R+RLFLFP     S   G    S+ S  D F+ ALN
Subjt:  TAKPSRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATAC
GTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATATCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCA
CCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTCCCAATT
AAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTCGAGAGCTCGAATAGTTCGGAGGACTGGTTTCTGAATGCTTTGAATGGTGCGGGTTTGCTCAACAGA
mRNA sequenceShow/hide mRNA sequence
CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATAC
GTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATATCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCA
CCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTCCCAATT
AAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTCGAGAGCTCGAATAGTTCGGAGGACTGGTTTCTGAATGCTTTGAATGGTGCGGGTTTGCTCAACAGA
Protein sequenceShow/hide protein sequence
RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPI
KPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR