; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g1774 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g1774
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase II subunit 10
Genome locationMC09:22892774..22893367
RNA-Seq ExpressionMC09g1774
SyntenyMC09g1774
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EFJ10727.1 hypothetical protein SELMODRAFT_127452 [Selaginella moellendorffii]9.91e-4093.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPE EALD LGLVRYCCRRMLMTHVDLIEKLLNYNS
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]1.42e-4093.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]4.08e-4093.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]8.53e-4298.44Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]4.95e-4195.31Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

TrEMBL top hitse value%identityAlignment
A0A0A0KQ80 Uncharacterized protein6.87e-4193.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein1.97e-4093.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein1.97e-4093.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein4.13e-4298.44Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

D8QXA0 Uncharacterized protein4.80e-4093.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPE EALD LGLVRYCCRRMLMTHVDLIEKLLNYNS
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

SwissProt top hitse value%identityAlignment
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC59.3e-2987.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc52.5e-2685.48Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGKVIGNKWD+YL LLQ DY EG+ALD L L RYCCRRML+THVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 102.1e-2887.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein2.9e-3090.62Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MI+PVRCFTCGKVIGNKWD+YLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC53.3e-2683.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY
        MIIP+RCFTCGKVIGNKW+SYL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.5e-2987.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

AT1G61700.1 RNA polymerases N / 8 kDa subunit2.1e-3190.62Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MI+PVRCFTCGKVIGNKWD+YLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACTCTTATCTAGAGCTTCTGCAAGCAGACTATCCGGAAGGGGAGGCGTTGGATTT
ATTAGGGCTAGTTCGGTATTGCTGTCGGCGGATGCTTATGACTCATGTGGATCTGATCGAGAAGCTGTTGAACTACAACAGT
mRNA sequenceShow/hide mRNA sequence
ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACTCTTATCTAGAGCTTCTGCAAGCAGACTATCCGGAAGGGGAGGCGTTGGATTT
ATTAGGGCTAGTTCGGTATTGCTGTCGGCGGATGCTTATGACTCATGTGGATCTGATCGAGAAGCTGTTGAACTACAACAGT
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS