; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC09g1830 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g1830
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionphotosystem II core complex proteins psbY, chloroplastic-like
Genome locationMC09:23341402..23341941
RNA-Seq ExpressionMC09g1830
SyntenyMC09g1830
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0045454 - cell redox homeostasis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR009388 - Photosystem II PsbY
IPR038760 - Photosystem II PsbY, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151784.1 photosystem II core complex proteins psbY, chloroplastic-like [Momordica charantia]3.01e-110100Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPAL
        MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPAL
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPAL

Query:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]1.85e-9186.52Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ
        MAA+MATMAILN KCF+ NRTP     SKPTTPISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]2.63e-9185.96Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ
        MAA+MATMAILN KCF+ NRTP+    SKPT PISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]1.31e-9185.96Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ
        MAA+MATMAILN KCF+ NRTP     SKPTTP+SLP+   K+SLAG+AIAGAIFSTLS +DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]5.56e-9386.67Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLP-----IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNI
        MAA+MATMAILN KCF+ N+TP++PS  KPT PISLP      K SLAGTAIAGAIFST SS DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNI
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLP-----IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL ASGLV TPEAMAAEASSDGRGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
TrEMBL top hitse value%identityAlignment
A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like1.54e-9085.56Show/hide
Query:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNI
        MAA+MATMAILN KCF+ +N+TP++   SKPT PISLP     K SLAGTAIAGAIFSTLSS DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNI
Subjt:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A5A7SY80 Photosystem II core complex proteins psbY1.54e-9085.56Show/hide
Query:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNI
        MAA+MATMAILN KCF+ +N+TP++   SKPT PISLP     K SLAGTAIAGAIFSTLSS DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNI
Subjt:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A6J1DE36 photosystem II core complex proteins psbY, chloroplastic-like1.46e-110100Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPAL
        MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPAL
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPAL

Query:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like8.98e-9286.52Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ
        MAA+MATMAILN KCF+ NRTP     SKPTTPISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like1.27e-9185.96Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ
        MAA+MATMAILN KCF+ NRTP+    SKPT PISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAVAWVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
SwissProt top hitse value%identityAlignment
O49347 Photosystem II core complex proteins psbY, chloroplastic1.4e-4559.16Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVA
        MAA+MAT      KC SLN +P    N   + P ISLP      +  ++  TA+AGA+FS+LS S+ A A QQIA +    A  DNRGLALLLP+VPA+A
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
P80470 Photosystem II core complex proteins psbY, chloroplastic1.3e-4660.8Show/hide
Query:  MAASMA-TMAILNPKCFSLNRTPIIPSNSKPTT-PISL-PIKTS-----------LAGTAIAGAIFSTLSSSDAAFAAQQIADIA----EGDNRGLALLL
        MAA+MA TMA+LN KC +LN      ++ KPT+ PISL P+  S           +   AIAGA+F+TL S D AFA QQ+ADIA      DNRGLALLL
Subjt:  MAASMA-TMAILNPKCFSLNRTPIIPSNSKPTT-PISL-PIKTS-----------LAGTAIAGAIFSTLSSSDAAFAAQQIADIA----EGDNRGLALLL

Query:  PLVPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLAASGLVM-TPEAMAAE----ASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        P++PA+ WVLFNILQPALNQIN+MR E KA IVGLGL GLA SGL++ TPEA AA       SD RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLVPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLAASGLVM-TPEAMAAE----ASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Arabidopsis top hitse value%identityAlignment
AT1G67740.1 photosystem II BY9.8e-4759.16Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVA
        MAA+MAT      KC SLN +P    N   + P ISLP      +  ++  TA+AGA+FS+LS S+ A A QQIA +    A  DNRGLALLLP+VPA+A
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAGAGCAAGCTTCAATGGCGGCATCAATGGCGACCATGGCGATCCTCAACCCCAAATGCTTCTCCCTCAACAGAACCCCCATCATCCCCTCAAACTCAAAACCCACCAC
ACCCATCTCCCTCCCAATTAAAACTTCCCTCGCCGGAACCGCCATCGCCGGAGCTATCTTCTCGACATTGAGCTCCAGCGACGCCGCCTTCGCCGCCCAACAAATCGCCG
ACATAGCGGAGGGCGACAACCGTGGGCTCGCCCTTTTGCTGCCCCTCGTCCCGGCGGTGGCGTGGGTGCTCTTCAACATTCTTCAGCCGGCGCTTAATCAGATCAACCGG
ATGCGAACGGAGAAGGCGGTGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCGGGCTTGGTCATGACGCCGGAAGCTATGGCGGCGGAAGCTTCCAGCGACGGCAG
GGGACAACTTCTGCTGATTGTTGTGGCGCCGGCGATTCTGTGGGTTCTGTACAACATTCTACAGCCGGCGTTGAACCAGCTCAATCGGATGAGATCCGAA
mRNA sequenceShow/hide mRNA sequence
ACAGAGCAAGCTTCAATGGCGGCATCAATGGCGACCATGGCGATCCTCAACCCCAAATGCTTCTCCCTCAACAGAACCCCCATCATCCCCTCAAACTCAAAACCCACCAC
ACCCATCTCCCTCCCAATTAAAACTTCCCTCGCCGGAACCGCCATCGCCGGAGCTATCTTCTCGACATTGAGCTCCAGCGACGCCGCCTTCGCCGCCCAACAAATCGCCG
ACATAGCGGAGGGCGACAACCGTGGGCTCGCCCTTTTGCTGCCCCTCGTCCCGGCGGTGGCGTGGGTGCTCTTCAACATTCTTCAGCCGGCGCTTAATCAGATCAACCGG
ATGCGAACGGAGAAGGCGGTGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCGGGCTTGGTCATGACGCCGGAAGCTATGGCGGCGGAAGCTTCCAGCGACGGCAG
GGGACAACTTCTGCTGATTGTTGTGGCGCCGGCGATTCTGTGGGTTCTGTACAACATTCTACAGCCGGCGTTGAACCAGCTCAATCGGATGAGATCCGAA
Protein sequenceShow/hide protein sequence
TEQASMAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVAWVLFNILQPALNQINR
MRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE