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MC09g_new0010 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC09g_new0010
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationMC09:493748..494607
RNA-Seq ExpressionMC09g_new0010
SyntenyMC09g_new0010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.47e-3043.57Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR
        R+FLW GT +     L+RWN    PK +GGL I S+  TN ALL KWL +F  E   LW  LI +KY Q  +   P+  K+SS+ +PW  +      F++
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR

Query:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKK
           W+V +  D+ FW  NW GN PL LV PR +ALS  KK
Subjt:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKK

KAA0065894.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.01e-3346.76Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR
        RDFLWK   D   ++LVRW+I T PK + GL I ++  TN ALL KWL RF +E +SLWV LIS KY  H +  +PT  K+S+ K PW  IIK    F  
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR

Query:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKK
           W++   ++L FW  NWT +GPL    PR YA   +K
Subjt:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKK

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.86e-3247.22Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH
        R+FLWKG+    GSHL+ W+I T PK +GGL I  + +TN+ALL+KWL R++ E NSLW  LI  KY  +HP + LP+    SSSKAPW  II   D F 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH

Query:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL
            W++ N   + FWY NW+  G L    PR +ALS  K+ S+
Subjt:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.09e-3246.53Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH
        R+FLWKG+    GSHL+ W+I T PK +GGL I  + ITN+ALL+KWL R++ E NSLW  LI  KY  +HP + LP+    SSSKAPW  II   + F 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH

Query:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL
        R   W++ N   + FW+ NW+  G L+    R +ALS  K+ S+
Subjt:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL

TYK05808.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.48e-3146.53Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH
        R+FLWKG+    GSHL+ W+I T  K +GGL I  + + N+ALL+KWL R++ E NSLW  LI  KY  +HP +I P+    SSSKAPW  II   D F 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH

Query:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL
            W++ N+  + FWY NW+  G L    PR +ALS  KK S+
Subjt:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL

TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein7.14e-3143.57Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR
        R+FLW GT +     L+RWN    PK +GGL I S+  TN ALL KWL +F  E   LW  LI +KY Q  +   P+  K+SS+ +PW  +      F++
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR

Query:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKK
           W+V +  D+ FW  NW GN PL LV PR +ALS  KK
Subjt:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKK

A0A5A7VF18 LINE-1 retrotransposable element ORF2 protein9.75e-3446.76Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR
        RDFLWK   D   ++LVRW+I T PK + GL I ++  TN ALL KWL RF +E +SLWV LIS KY  H +  +PT  K+S+ K PW  IIK    F  
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHR

Query:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKK
           W++   ++L FW  NWT +GPL    PR YA   +K
Subjt:  TTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKK

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.87e-3247.22Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH
        R+FLWKG+    GSHL+ W+I T PK +GGL I  + +TN+ALL+KWL R++ E NSLW  LI  KY  +HP + LP+    SSSKAPW  II   D F 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH

Query:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL
            W++ N   + FWY NW+  G L    PR +ALS  K+ S+
Subjt:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein2.46e-3246.53Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH
        R+FLWKG+    GSHL+ W+I T PK +GGL I  + ITN+ALL+KWL R++ E NSLW  LI  KY  +HP + LP+    SSSKAPW  II   + F 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH

Query:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL
        R   W++ N   + FW+ NW+  G L+    R +ALS  K+ S+
Subjt:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein2.17e-3146.53Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH
        R+FLWKG+    GSHL+ W+I T  K +GGL I  + + N+ALL+KWL R++ E NSLW  LI  KY  +HP +I P+    SSSKAPW  II   D F 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYV-QHPLEILPTTCKFSSSKAPWSHIIKMTDIFH

Query:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL
            W++ N+  + FWY NW+  G L    PR +ALS  KK S+
Subjt:  RTTTWEVGNDRDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.3e-1231.54Show/hide
Query:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSH-----IIKMT
        R FLW  T ++   HLV+W+    PK +GGL +++    N+AL++K   R   E NSLW  ++  KY  H  EI  +  ++   K  WS       I + 
Subjt:  RDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSH-----IIKMT

Query:  DIFHRTTTWEVGNDRDLYFWYHNWTGNGPL
        D+      W  G+ + + FW   W    PL
Subjt:  DIFHRTTTWEVGNDRDLYFWYHNWTGNGPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGACTTCCTTTGGAAAGGTACCGGCGATGAAGGAGGATCTCATCTTGTTAGATGGAACATTGCCACTCTCCCAAAATCACAAGGGGGTCTTGACATTAAAAGTAT
TAGCATCACAAACAAGGCTCTACTTACAAAGTGGTTGCGGCGCTTCTTCGATGAAAATAACAGTCTATGGGTTTCTTTGATTTCTGCTAAATATGTACAACATCCTCTAG
AGATTCTTCCCACCACTTGCAAATTCAGTAGCTCAAAAGCTCCTTGGTCCCATATTATTAAAATGACGGACATCTTTCACAGAACGACTACATGGGAAGTTGGCAATGAC
AGAGATTTGTATTTCTGGTATCATAATTGGACCGGCAACGGGCCCCTGTACCTAGTTAAACCCAGATTTTATGCTCTCTCTGACAAAAAAAAACTCTCTCTGTTTTTGAA
GCTTGGCAATTTGGCTGTTGGAATTTCCTCCCTTACCGTCCTATGCTTGACAGGGAGCTGGACAATTGGGCCATTTTTACATCCTCTTTCAAACAACCCTTTCATTCTAA
AGGTCCTGATAAAATCATCTGGGGAGCTATTTCCATTAGAGCATTTTCTGTACAGGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGACTTCCTTTGGAAAGGTACCGGCGATGAAGGAGGATCTCATCTTGTTAGATGGAACATTGCCACTCTCCCAAAATCACAAGGGGGTCTTGACATTAAAAGTAT
TAGCATCACAAACAAGGCTCTACTTACAAAGTGGTTGCGGCGCTTCTTCGATGAAAATAACAGTCTATGGGTTTCTTTGATTTCTGCTAAATATGTACAACATCCTCTAG
AGATTCTTCCCACCACTTGCAAATTCAGTAGCTCAAAAGCTCCTTGGTCCCATATTATTAAAATGACGGACATCTTTCACAGAACGACTACATGGGAAGTTGGCAATGAC
AGAGATTTGTATTTCTGGTATCATAATTGGACCGGCAACGGGCCCCTGTACCTAGTTAAACCCAGATTTTATGCTCTCTCTGACAAAAAAAAACTCTCTCTGTTTTTGAA
GCTTGGCAATTTGGCTGTTGGAATTTCCTCCCTTACCGTCCTATGCTTGACAGGGAGCTGGACAATTGGGCCATTTTTACATCCTCTTTCAAACAACCCTTTCATTCTAA
AGGTCCTGATAAAATCATCTGGGGAGCTATTTCCATTAGAGCATTTTCTGTACAGGATGTGA
Protein sequenceShow/hide protein sequence
MRDFLWKGTGDEGGSHLVRWNIATLPKSQGGLDIKSISITNKALLTKWLRRFFDENNSLWVSLISAKYVQHPLEILPTTCKFSSSKAPWSHIIKMTDIFHRTTTWEVGND
RDLYFWYHNWTGNGPLYLVKPRFYALSDKKKLSLFLKLGNLAVGISSLTVLCLTGSWTIGPFLHPLSNNPFILKVLIKSSGELFPLEHFLYRM