CuGenDBv2

Gene ID	MC10g0201
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Genome location	MC10:1464290..1467122
RNA-Seq Expression	MC10g0201
Synteny	MC10g0201
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR038789 - Protein LOW PSII ACCUMULATION 2 like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022140851.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Momordica charantia]

1.38e-132

100

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR
        MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG
        ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG
Subjt:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG

Query:  EKS
        EKS
Subjt:  EKS

XP_022941727.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]

2.36e-102

82.93

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR
        MALQII HSPSSFTRKPY LP IPL FPSK  F+IKSQN SESE  K ISK VDDA V T      SSAQGFGS  +QST  SK SPKAT SKGKQKGKR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        QRASIIRRSPVEKPVFVG+VDEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEKS
        KG+KS
Subjt:  KGEKS

XP_022973018.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]

5.53e-101

82.44

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR
        MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQ  S SESEK ISK VDDA+V T      SSAQGFGS  +QST  SK SPKAT SKGKQKGKR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        QRASIIRRSPVEKPVFVG+VDEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEKS
        KG+KS
Subjt:  KGEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]

1.36e-101

82.44

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR
        MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQN SESE  K ISK VDDA V T      SSAQGFGS  +QST  SK SPKAT SKGKQKGKR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        QRASIIRRSPVEKPVFVG+VDEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEKS
        KG+KS
Subjt:  KGEKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]

6.90e-100

82.93

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR
        MALQI+ HSPSSFTRKPY LP   L FPSK  F+I SQN SESE  K ISK VDDA +ATSSK SSSS QGFGSS +QST  SK SPKA     KQKGKR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        QRASIIRRSPVEKPVFVG+VDEEAAKEQ RNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKF VKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEKS
        K EKS
Subjt:  KGEKS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic

1.29e-97

79.31

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR
        MALQI+ HSPSSFT+KPY LP   L F SK  F+IKSQN SESE  K ISK+VDDA +ATSSK S+SS QGFGSS  QSTS  + K+TP   KQKGKRQR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG
        ASIIRRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+  VKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEK K 
Subjt:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG

Query:  EKS
        EKS
Subjt:  EKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 2

5.26e-97

78.82

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR
        MALQI+ HSPSSFT+KPY LP   L F SK  F+IKSQN SESE  K ISK+VDDA +ATSSK  +SS+QGFGSS  QSTS  + K+TP   KQKGKRQR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG
        ASIIRRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+  VKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEK K 
Subjt:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG

Query:  EKS
        EKS
Subjt:  EKS

A0A6J1CH98 protein LOW PSII ACCUMULATION 2, chloroplastic

6.68e-133

100

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR
        MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQR

Query:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG
        ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG
Subjt:  ASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKG

Query:  EKS
        EKS
Subjt:  EKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic

1.14e-102

82.93

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR
        MALQII HSPSSFTRKPY LP IPL FPSK  F+IKSQN SESE  K ISK VDDA V T      SSAQGFGS  +QST  SK SPKAT SKGKQKGKR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        QRASIIRRSPVEKPVFVG+VDEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEKS
        KG+KS
Subjt:  KGEKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic

2.68e-101

82.44

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Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR
        MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQ  S SESEK ISK VDDA+V T      SSAQGFGS  +QST  SK SPKAT SKGKQKGKR
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        QRASIIRRSPVEKPVFVG+VDEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEKS
        KG+KS
Subjt:  KGEKS

SwissProt top hits

e value

%identity

Alignment

F4KDA6 Protein LPA2

2.8e-42

54.9

Show/hide

Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRN--FVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKR
        MALQI  HSP SF+ +PY L      F + RN  F IK QNS      ++ S   +D S    SK SSSS  GFG SP  S+S     +  + G +KGK 
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRN--FVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        +R  + RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK  VKY+YP FTP+V LFVAGT AYGVLKY+QNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEK
        KG++
Subjt:  KGEK

Arabidopsis top hits

e value

%identity

Alignment

AT5G51545.1 low psii accumulation2

2.0e-43

54.9

Show/hide

Query:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRN--FVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKR
        MALQI  HSP SF+ +PY L      F + RN  F IK QNS      ++ S   +D S    SK SSSS  GFG SP  S+S     +  + G +KGK 
Subjt:  MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRN--FVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT
        +R  + RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK  VKY+YP FTP+V LFVAGT AYGVLKY+QNEK 
Subjt:  QRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKT

Query:  KGEK
        KG++
Subjt:  KGEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGCTACAAATAATCCCCCACTCTCCCTCTTCTTTCACCAGGAAACCCTATCGCCTTCCCACCATACCTCTTCAATTTCCCTCAAAACGTAATTTCGTCATCAAATC
ACAGAATTCGTCGGAGTCGGAGTCGGAGAAGCTCATTTCGAAGGTTGTTGATGATGCTTCAGTTGCGACGTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTTGGTT
CTTCACCGACTCAATCAACAAGCAAATTGAGTCCGAAGGCCACTCCTTCTAAGGGGAAGCAGAAGGGCAAGCGGCAGAGGGCATCGATTATTCGGCGTTCGCCGGTGGAG
AAACCGGTGTTTGTTGGACAGGTAGATGAAGAGGCGGCTAAGGAGCAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTGATCCTCGTCGA
GGGCATTGTGCTCGCGGCATCCGGTTTCTTACCGGAAGAGTGGGATAAGTTCCTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTTTCTCTGTTTGTTGCTGGAA
CTGTTGCATATGGAGTTTTGAAGTATCTTCAGAACGAGAAAACTAAAGGTGAGAAATCA

mRNA sequence

Show/hide mRNA sequence

GCGTGGAGGAATTTCAGGAACTTGAGGGAGAAAATGTAATTATGGAAACTTTTATACTGGAAGAAAAAATGGATTCCATTACTGTAAACTGAACCAACCTTAACCAAATA
AACTGAAAATGGCGCTACAAATAATCCCCCACTCTCCCTCTTCTTTCACCAGGAAACCCTATCGCCTTCCCACCATACCTCTTCAATTTCCCTCAAAACGTAATTTCGTC
ATCAAATCACAGAATTCGTCGGAGTCGGAGTCGGAGAAGCTCATTTCGAAGGTTGTTGATGATGCTTCAGTTGCGACGTCATCCAAGGCGTCGAGCTCATCTGCTCAAGG
TTTTGGTTCTTCACCGACTCAATCAACAAGCAAATTGAGTCCGAAGGCCACTCCTTCTAAGGGGAAGCAGAAGGGCAAGCGGCAGAGGGCATCGATTATTCGGCGTTCGC
CGGTGGAGAAACCGGTGTTTGTTGGACAGGTAGATGAAGAGGCGGCTAAGGAGCAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTGATC
CTCGTCGAGGGCATTGTGCTCGCGGCATCCGGTTTCTTACCGGAAGAGTGGGATAAGTTCCTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTTTCTCTGTTTGT
TGCTGGAACTGTTGCATATGGAGTTTTGAAGTATCTTCAGAACGAGAAAACTAAAGGTGAGAAATCA

Protein sequence

Show/hide protein sequence

MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVE
KPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKGEKS

MC10g0201 (gene) of Bitter gourd (Dali-11) v1 genome