CuGenDBv2

Gene ID	MC10g0290
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	classical arabinogalactan protein 1-like
Genome location	MC10:2379861..2380238
RNA-Seq Expression	MC10g0290
Synteny	MC10g0290
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.42e-39

77.05

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+++A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS S      PSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYA
        SGN AAS+SFS+FGSVA VLYA
Subjt:  SGNGAASLSFSVFGSVAVVLYA

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

4.04e-41

76.98

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS S      PSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGN AAS+SFS+FGSVA VLYA VLM
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

XP_022992086.1 classical arabinogalactan protein 1-like [Cucurbita maxima]

7.73e-39

74.6

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS S      PSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGN AAS+S S+FGSVA VL+A V M
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

3.03e-41

76.98

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+++A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+ L+SPPSPPAASPS SPS SPS    PSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGN AAS+S S+FGSVA VLYA VLM
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

5.88e-44

81.75

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RSF  MIL+ALLIGS IAQSP ASPS  PSKSPSKAPS SPS+KSPKSSPAAAPTPS LKSPPSPP+ SP+TSPS   SPA+SPS ISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGNGAAS+SFSVFGSVAVVLY  VL+
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V5Q9 Classical arabinogalactan protein 1-like

2.03e-38

74.6

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RS   MIL++ LI S  AQSP+        +SPSKAPSVSPS+KSPKSSPA APTPS LKSPPSPP+ SPSTSPSSSPSPA+SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGNGAAS++FSV GS AV LYA VLM
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

A0A6J1E9Q3 classical arabinogalactan protein 1-like

1.34e-37

75.4

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RSF VMIL+ALLIGS IAQSP+ASPSL P KSPSKAPS SPS+KSPKSSPAA PTP+               SPS+SPSPA+SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SG+GAAS+SFSVFGSVAVVLYA VLM
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

A0A6J1FW49 classical arabinogalactan protein 1-like

1.96e-41

76.98

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS S      PSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGN AAS+SFS+FGSVA VLYA VLM
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

A0A6J1J6X2 classical arabinogalactan protein 1-like

1.90e-37

75.4

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RSF VMIL+ALLIGS IAQSP+ASPSL P KSPSKAP  SPS+KSPKSSPAA PTP+               SPS+SPSPA+SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGNGAAS+SFSVFGSVAVVLYA VLM
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

A0A6J1JSK4 classical arabinogalactan protein 1-like

3.74e-39

74.6

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS S      PSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLM
        SGN AAS+S S+FGSVA VL+A V M
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLM

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

3.3e-09

48.48

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Query:  ARSFAVMILIALLIGSTIAQSPSASPS------LPPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP
        ++S   ++L ALLI S +AQSP+ +PS      + P+ SP K  AP+ +P + SP  SPAAA TP    SPPSPP A   T    + SPA SPS+IS  P
Subjt:  ARSFAVMILIALLIGSTIAQSPSASPS------LPPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP

Query:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLM
         +AP P+  GA S  F+ FGSVAV+L AAVL+
Subjt:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLM

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

2.3e-10

48.48

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Query:  ARSFAVMILIALLIGSTIAQSPSASPS------LPPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP
        ++S   ++L ALLI S +AQSP+ +PS      + P+ SP K  AP+ +P + SP  SPAAA TP    SPPSPP A   T    + SPA SPS+IS  P
Subjt:  ARSFAVMILIALLIGSTIAQSPSASPS------LPPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP

Query:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLM
         +AP P+  GA S  F+ FGSVAV+L AAVL+
Subjt:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLM

Sequences

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CDS sequence

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ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGCCTCCGAGCAAATCGCCGTC
GAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTT
CTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTC
TCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATG

mRNA sequence

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Protein sequence

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MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSF
SVFGSVAVVLYAAVLM

MC10g0290 (gene) of Bitter gourd (Dali-11) v1 genome