; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC10g0368 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g0368
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionhistone deacetylase 6
Genome locationMC10:2964388..2966909
RNA-Seq ExpressionMC10g0368
SyntenyMC10g0368
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]6.48e-8986.81Show/hide
Query:  MANEAGSSSSNLPPCIIEEE-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA
        MANEAGSSSSN  PC+IEEE GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC EC+NPKENWLCLCCKN+ CSRFVNKHMLQHYQQS H LA
Subjt:  MANEAGSSSSNLPPCIIEEE-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]3.14e-8477.16Show/hide
Query:  MANEAGSSSSNLPPCIIEEE-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSE------------------CQNPKENWLCLCCKNILCSR
        MANEAGSSSSN  PC+IEEE GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC E                  C+NPKENWLCLCCKN+ CSR
Subjt:  MANEAGSSSSNLPPCIIEEE-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSE------------------CQNPKENWLCLCCKNILCSR

Query:  FVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        FVNKHMLQHYQQS H LALSYSDLSVWCFSCDAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Subjt:  FVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]1.32e-8282.43Show/hide
Query:  MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQST
        MA EAGSSSS  N  P IIE E E   E L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QST
Subjt:  MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

XP_022149228.1 histone deacetylase 6 [Momordica charantia]9.56e-107100Show/hide
Query:  MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLAL
        MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLAL
Subjt:  MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLAL

Query:  SYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC
        SYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC
Subjt:  SYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC

XP_038904979.1 histone deacetylase 6 [Benincasa hispida]6.97e-8484.03Show/hide
Query:  MANEAGSSSSNLPPCIIEEEGEEQL-FGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA
        MA EAGSSSSN  P I+EEE EE+L +GAE+GWVEALT CDHLA LS DLAHIP PD  CSECQNPKENWLCL CK++ CSRFVNKHMLQHY+Q THCLA
Subjt:  MANEAGSSSSNLPPCIIEEEGEEQL-FGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein1.71e-8281.51Show/hide
Query:  MANEAGSSSSNLPPC--IIEEEGEEQL-FGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHC
        MA +AGSSSS   P   IIE+E EE+L +GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENW+CLCCK++ CSRFVNKHMLQHY+QSTHC
Subjt:  MANEAGSSSSNLPPC--IIEEEGEEQL-FGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

A0A1S3BZ94 histone deacetylase 66.40e-8382.43Show/hide
Query:  MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQST
        MA EAGSSSS  N  P IIE E E   E L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QST
Subjt:  MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

A0A540MHN3 UBP-type domain-containing protein1.73e-7980Show/hide
Query:  MANEAGSSSSNLPPCIIEEEGEEQLF-GAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA
        MA +AGSSS+     +   E EE LF GAE+GWVEA T CDHLASLSSDLAHIPTPDTAC+ CQ+P ENWLCLCCK+ILCSRFVNKHMLQHYQQS HCLA
Subjt:  MANEAGSSSSNLPPCIIEEEGEEQLF-GAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRS
        LSYSDLSVWCFSCDAYLDAQ+I +LRPVYE AYILKFGEAPPFR+
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRS

A0A5A7TNA2 Histone deacetylase 62.60e-8281.76Show/hide
Query:  MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQST
        MA EAGSSSS  N  P IIE E E   E L+GA +GWV+ALT CDHLASLSSDLAHIP P T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+QST
Subjt:  MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAYILKFGE PPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR

A0A6J1D695 histone deacetylase 64.63e-107100Show/hide
Query:  MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLAL
        MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLAL
Subjt:  MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLAL

Query:  SYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC
        SYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC
Subjt:  SYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 61.4e-1637.14Show/hide
Query:  ANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALS
        ++ +GSSSS+  P        E +    A  V  L  C HL  +           TACSECQ   E W CL C    C RFVN+H + H+  S+H +ALS
Subjt:  ANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALS

Query:  YSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPP
         +DLSVWC+ CD+Y+    +   +     A+  KFGE  P
Subjt:  YSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A3.1e-1135.44Show/hide
Query:  TACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILK
        T C  C +  ENW+C+ C  + CSR VN H  +H++ + H ++ S+SD S WC++CD Y+         P++++  IL+
Subjt:  TACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILK

Q9H0E7 Ubiquitin carboxyl-terminal hydrolase 444.4e-1030.95Show/hide
Query:  ALTYCDHLA--SLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL
        A+  C H+    L+ D + +      C +C   +  W CL C ++ C R++ +H L+H+Q+S+H +AL  +++ V+C+ CD Y+
Subjt:  ALTYCDHLA--SLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 62.2e-1733.96Show/hide
Query:  GSSSSNLPPCIIEEEGEEQLFGAEAGW-----------------------VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRF
        G+S S  P       GEE L G  AG                        V  L +C HL ++    A        C +C   +ENW+CL C  + C R+
Subjt:  GSSSSNLPPCIIEEEGEEQLFGAEAGW-----------------------VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRF

Query:  VNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPP
        +N HMLQH+  S H L LSY DLS WC+ C AY+  Q + +++    +A+  KFGE  P
Subjt:  VNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPP

Q9Z2V5 Histone deacetylase 64.1e-1638.53Show/hide
Query:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY
        V  L++C HL ++    A        C  C   +ENW+CL C  + CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+  + +Q+++     A+
Subjt:  VEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAY

Query:  ILKFGEAPP
          KFGE  P
Subjt:  ILKFGEAPP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein1.4e-1154.1Show/hide
Query:  MANEA-GSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACS
        MA +A  SSSS+ PP  + +E ++ + GA +GWVEA   CDHL +LS DL H+PTPDT CS
Subjt:  MANEA-GSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACS

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein9.3e-5667.61Show/hide
Query:  MANEA-GSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA
        MA +A  SSSS+ PP  + +E ++ + GA +GWVEA   CDHL +LS DL H+PTPDT CS CQNP ENWLCLCCK +LCSRFVN+HML H+QQ+ HCLA
Subjt:  MANEA-GSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPP
        LSYSDLSVWCF C+AYLDAQ+I +LRP+++ AYILKFGEAPP
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPP

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein1.2e-0527.87Show/hide
Query:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL
        ++ C  CQ  +  W+C+ C  + C R+   H  +H++++ HC +L      VW ++ D Y+
Subjt:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein1.2e-0527.87Show/hide
Query:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL
        ++ C  CQ  +  W+C+ C  + C R+   H  +H++++ HC +L      VW ++ D Y+
Subjt:  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACGAAGCCGGCTCCTCCTCTTCGAACCTTCCGCCATGCATAATTGAAGAAGAAGGTGAAGAGCAGTTATTCGGCGCCGAAGCGGGATGGGTAGAAGCCCTGAC
TTATTGCGATCACCTGGCTTCGCTGTCTTCCGACCTCGCTCACATTCCGACCCCTGATACTGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCT
GCAAGAATATCCTCTGTAGCCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTC
TCCTGCGATGCGTATTTAGATGCACAAGTGATTCAAGAACTACGACCAGTATATGAAGTTGCCTATATATTGAAATTCGGCGAGGCCCCACCATTTCGTTCGTGTTAA
mRNA sequenceShow/hide mRNA sequence
CACAAACACAGAGTAAAGATTCTGCAAGTCGAAGCAAGCAACTCTTGAAATTCCGTCTCCTCTTCCATGGCGAACGAAGCCGGCTCCTCCTCTTCGAACCTTCCGCCATG
CATAATTGAAGAAGAAGGTGAAGAGCAGTTATTCGGCGCCGAAGCGGGATGGGTAGAAGCCCTGACTTATTGCGATCACCTGGCTTCGCTGTCTTCCGACCTCGCTCACA
TTCCGACCCCTGATACTGCCTGCAGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGCAAGAATATCCTCTGTAGCCGTTTTGTGAACAAGCACATGCTT
CAACATTATCAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGATGCGTATTTAGATGCACAAGTGATTCAAGAACTACG
ACCAGTATATGAAGTTGCCTATATATTGAAATTCGGCGAGGCCCCACCATTTCGTTCGTGTTAATCATCCTGCAGGGAGGACTGAAACTTCGGACTAGTGTTATAGTTTT
GATAGTCTTGATATCTTAGATGTCTTGGTCTCTTGGTTTGCAGAAGTGAGAATTTCAAGCAAATTGCAACGATCTTCAATATGGATTGGTTTGGGTTATCAGATGCTCAT
GATAAGGTGTTGATGGTTTCTTTTACAGAAATTTAGGGATATATTGGAATCTCCTATCTTGTTCAAGAAAATTGAAGGGAATTTTTACTCAATAACATTAATGAAATCAG
CCCTCCATTTTTCTCATTCTTTGTTTTCAAGCAGTTTCAAGTGTTGGCTTTTTGGACTGGAGAAATTCTGCTTCTTTTTTGGCTGGAAAGAAATTTCTAGGCAGTTTCAA
CTATGCATCTAGCAAATTATTCTACTGAAATGTTGCTTTCATGTCGTTCTCCTCAATCCAGCCTCCCTTTCATTGAAGGCCTTGAAGAAAATTGAAGAAAAACAAAAGAA
GATTATGAAATAGAGACATCAATTGATCAATGAACGCAATAGAAACCTCCATCGATTTGGCCACATAAAACCATCGTTGTTGCAGCATTGCATAAGAATTAGTACGATCA
TCTTTTCAACTGTAATTACAATTAAATATAGACCTCAACAAGCTAGTTGTAGCTAGTATCAACGTCTATCATCTTCCCCAAAATTTGGCAAGCTTCCCAGCACATCACAG
GCACGTTGCTCGCACTCCAATTTACCCCATCTTGCATCAACTCGTTCGCACGGGAATATTGGTT
Protein sequenceShow/hide protein sequence
MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCF
SCDAYLDAQVIQELRPVYEVAYILKFGEAPPFRSC