; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC10g0373 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g0373
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionmediator of RNA polymerase II transcription subunit 28
Genome locationMC10:2982962..2987144
RNA-Seq ExpressionMC10g0373
SyntenyMC10g0373
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034456 - Mediator of RNA polymerase II transcription subunit 28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]4.09e-8492.2Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELK+KN+IIKK E+LIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]1.37e-8291.49Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELK+KNDIIKK ERLIEGWKKDLK+QL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]6.82e-92100Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]5.81e-8492.2Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELKLK+DIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]1.00e-8493.62Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELKLKN+IIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
TrEMBL top hitse value%identityAlignment
A0A0A0KT19 Uncharacterized protein1.98e-8492.2Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELK+KN+IIKK E+LIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 286.62e-8391.49Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELK+KNDIIKK ERLIEGWKKDLK+QL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
A0A6J1D7C5 mediator of RNA polymerase II transcription subunit 283.30e-92100Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
A0A6J1E897 mediator of RNA polymerase II transcription subunit 282.81e-8492.2Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELKLK+DIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 282.81e-8492.2Show/hide
Query:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS
        MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEIS

Query:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        AIEEELKLK+DIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
SwissProt top hitse value%identityAlignment
Q9LFA5 Mediator of RNA polymerase II transcription subunit 286.9e-4065.19Show/hide
Query:  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEEL
        P ++SP++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P + E+L+K+I+ +EEEL
Subjt:  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEEL

Query:  KLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        K K+++IKKH RL +  +K +K+Q+ KH +ELEKV
Subjt:  KLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
Arabidopsis top hitse value%identityAlignment
AT3G52860.1 unknown protein4.9e-4165.19Show/hide
Query:  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEEL
        P ++SP++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P + E+L+K+I+ +EEEL
Subjt:  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEEL

Query:  KLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
        K K+++IKKH RL +  +K +K+Q+ KH +ELEKV
Subjt:  KLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGATATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGA
AGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGG
CAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGAGATATCCGCCATTGAGGAGGAACTAAAATTA
AAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTTTAG
mRNA sequenceShow/hide mRNA sequence
AAAGATATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGA
AGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGG
CAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGAGATATCCGCCATTGAGGAGGAACTAAAATTA
AAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTTTAGTAGCTCCA
ATAGTCTGCACTATCCAATACTCTATTGTTAAGTTAATTGTAGATGCGATCAATTAATGGGTGGGGTTTGGTGTGGCATATATTGTTCAGTCTCCTTCTTCAGTTGGATC
TGTTATGAGTCCATATTTCATACTGACTAGAAAAACGTGGAAAAGTGTAGGGGATTGCAGAGAATGCAATATTGCCAAGTAACTAATATGATATGTATTCATGAAGTTTT
GTGTTTCAAAGAAAGCAGTGGACACTAAAACTGCAGAATAGCAAAACGCTGCTATCATAACTGAAGATAATATTCAGGTAATGTACAGTTGATTACGTCAAGGAAATTAG
ACCTCGCTCAAAACTTGCTTCCTTTCCTCCTCTTCAGCTTTGATCCAGGCAGCCTGCAGCATGAAAAAACAATAAGCAAAAGCAACTTCATAATACAATAAGTTAGTGCA
TTCAAGTCGAAATATCACATATTTACAAACAATTGTATGCAATATTATGTATACCTTGTCTCGTTCAAGTTTGGAGAGATGTGGTTTCATGGAATCTCCCAAACTCAAGC
CTCCCCAGGCTGCCTGTAGGTCTCTCTCCCTTGCTTCACGGCGGGATAGAAAGTTTTTGTTCTGATTTTCTGATTCCTGAGAAGACATCAGCTTCTCCCTCTCGAGTCTT
GTTCTGTGTTTAACCAGAATTTCATCCAAACCCCCACCAGCTCCTCCATTGGTTACTGAATGCATATTTTTTTCACTTCTCTTTAAGTACTCTGGTATGCATCCCATCTT
CTCTTTCTCCAGTTTTGAAACACGCTTTACTAAAATTTCGTCCAAGCTTTGGCAACTAGGTGTACTGCGATTATCCACCTGTTTCTTATTATGTCTTTGCTTATCGTAGT
TGCTTTCAGCTAACACGGCTAGCATCTTTTCCCTTTCGAGTCTGTGCACCGGTTTCACTAAGATCTTATCTAAGCTATCTTCCATGTCCCTTCCCATTTTGAATGAAGAC
TTTGGCATACTAACATTCTCCTTTTCCTCTGGTTCTGTAGCAGAAAGAGATGATTCTTCTGAAGCAGACTTGTAACTTTTCTTCTTCAAGTCCATATCCCGATGTCCTCC
TTCACGCAGCTCAATTTTTCTTCTATTTTTTGCTTCTTGTACTTCTTTTTCAAGCCGCGAGACGTGTTTCACAAGATACTTATCAAGACTGGGAACTGCTGGAACTTCTT
TATGACTAACAAACGTTTGTCTTGCCTGCAACTTGTTGCTACGAGTTTTGAATTCTTCTCCACCCTTGCGTTTGGTCTCTTGAACTTCCTTCTCAAGATCTGAAGGTGGC
TTTGTCAGTACAGTTTCCAAGTTGGGGACAACTTTCTCATCCTGAACACTGCTCAATGGTGGAGGATTTTGTGACGGAGCTTTATCTAAGTCGATCTTCTCTTCCATGGT
TACTTCAGAATTCTCTGAGGTCAATTCCTTCGCTTCGTTCTTTCTGCTATTCTTTGCTTCAAGCACCTCTCTTTCCAATTTACTCGTGTGCTTTACCAAGAACTTGTCCA
GGCTTGGAAGTCCTGACTCGGCTTGCTTCCTCCCATTATGCGAATTCGATAAGTAGTTTCCAGAACCAACTGACGACGTTCTTCGATCATGAAGCTTGCCACTTTCTACT
TCAGCCAAGGCGGCATTCAAACCACAAGTTGCAACTATAGTGGCAAGAGAGGAAAGTTCATCTTCTTTCAAACGCCTAAGCCTTTCATACATCAAGTCCTCGATGTTTGT
TACCTTCTCAGAAGTTTTATGTCTCATATGTAAAACCAGCATCTTGCAATCCGAGTTGTTAGAGCTGAAATCATCCTTTCGAGATGCGTCATCAAGTTCCGAGCTGTTCT
CTGATTCACATTCGGAAGAATGTTCGGATGAGTCTACATTATTATCACTGTCTGGGTTCTGTGAGATTTTTCGTAGAAGTTCTTTAAAGTCATCTTCTCTTAAAGAAGAG
CAGTTCGCAAGCCTAATCAATGCTGTTTTTACTGCAGCAGCCACTTCCTTATCAACCTCAAATTCTGTCTCAAAAGATGCTGTAATGGTGTGAGTTGTAGACCCACCGCC
ACCAGAAGACAACGTTTCCATTTTGTTCTGTGGACAATTGGGTGTATCATACATGATCACTCCCATAGCTGCAGCTGCTTCGCAAGCTTCAGCTGCGATTTTCTCAGCCC
TAAACATCTGGCCTTCAGCTTCTTTAC
Protein sequenceShow/hide protein sequence
KDMADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKL
KNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV