; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC10g0378 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g0378
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionpumilio homolog 12-like
Genome locationMC10:3012887..3013392
RNA-Seq ExpressionMC10g0378
SyntenyMC10g0378
Gene Ontology termsGO:0006417 - regulation of translation (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001313 - Pumilio RNA-binding repeat
IPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold
IPR033133 - Pumilio homology domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9447116.1 hypothetical protein C3L33_20973, partial [Rhododendron williamsianum]3.52e-2644.6Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        +F  +A NCV IG D+ GC VLQ C+  A  EAK   +L+  I  N+  LSE+ +GNYVVQC +   I  V  G++ERL G +  LS +  GSNVVE+C+
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        +L  +  V +I+ E++ +P  +  V+QD FGN+V Q+AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

KAF7126360.1 hypothetical protein RHSIM_Rhsim11G0157500 [Rhododendron simsii]3.50e-2643.88Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        +F  +A NCV IG D+ GC VLQ C+  A  EAK   +L+  I  N+  LSE+ +GNYVVQC +   I     G+ ERL G +  LS +  GSNVVE+C+
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        +L  + +V +I+ E++ +P  +  V+QD FGN+V Q+AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

KAF7128113.1 hypothetical protein RHSIM_Rhsim11G0156100 [Rhododendron simsii]2.19e-2745.32Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        +F  +A NCV IG D+ GC VLQ C+  A  EAK   +L+  I  N+  LSE+ +GNYVVQC +   I  V  G+ ERL G +  LS S  GSNVVE+C+
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        +L  + +V +I+ E++++P  +  V+QD FGN+V Q+AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

KAG5526369.1 hypothetical protein RHGRI_032599 [Rhododendron griersonianum]2.59e-2542.45Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        +F  +A NCV IG D+ GC VLQ C+   Y +     +L+  I  N+  LSE+ +GNYVVQC +   I  V  G++ERL G +  LS +  GSNVVE+C+
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        +L  +  V +I+ E++ +P  +  V+QD FGN+V Q+AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

XP_022149262.1 pumilio homolog 12-like [Momordica charantia]3.48e-90100Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

TrEMBL top hitse value%identityAlignment
A0A059AG22 PUM-HD domain-containing protein5.90e-2342.55Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        Q LF A A+NCV + TDR GC VLQ C+  ++   +L  +L+  IV NS  LS++  GNYVVQ      ++ V + I ++L+GR+ DLS     SNVVEK
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CL+        ++++EL+ +P +   ++QDA+GN+VIQ AL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

A0A1Q3C0F9 PUF domain-containing protein (Fragment)3.42e-2241.01Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        L + +A NC+ I TD+ GC VLQ C+  A+ E +    L+  I+ NS  L+E+ +GNYVVQ  +   I  V   I ++L+G + +LS +  GSNVVEKCL
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        + C + E   I  EL+ +P  +  V+ D +GN+V+Q+AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

A0A2Z6NB06 PUM-HD domain-containing protein2.67e-2241.13Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        Q++ + +A NCV I T++VGC V+Q C+   Y     +  LL  I+ NS  L+ + +GNYVVQ  I   +    + I E L+G F  LS +   SNVVE 
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
         LR    S+VE +VEE++ +  ++ NV+QD +GNFV Q AL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

A0A6A4KFF9 PUM-HD domain-containing protein (Fragment)1.70e-2644.6Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        +F  +A NCV IG D+ GC VLQ C+  A  EAK   +L+  I  N+  LSE+ +GNYVVQC +   I  V  G++ERL G +  LS +  GSNVVE+C+
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        +L  +  V +I+ E++ +P  +  V+QD FGN+V Q+AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

A0A6J1D7G3 pumilio homolog 12-like1.69e-90100Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

SwissProt top hitse value%identityAlignment
Q92359 Pumilio domain-containing protein C6G9.144.3e-1030.5Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        Q +F+A+  + + + T R GC V+Q C    +     +  L+  IV ++  L ++  GNYV+Q  +          I      + + LS     SNV+EK
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        C+     +  EK++ E LM+   +P +++D+F N+VIQTAL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

Q9LM20 Putative pumilio homolog 8, chloroplastic2.7e-1234.75Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        + +F      C+ I T R GC VLQ CI  AY        L+  I  NS +L+++ +GNY VQ  +          +  +L+G + +LS     S++VE+
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CL  C +S   +IV EL+  P     ++QD + NFVIQ AL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

Q9LP21 Putative pumilio homolog 104.3e-1035.92Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQ-DCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVE
        + +  A    C  + T + GCYVLQ   I T  ++ +    L+  I  +S  LS++  GNYVVQC I   ++ V   +  R      +L+     S+V+E
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQ-DCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVE

Query:  KCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        KCLR   +S  E IV ELL  P     ++QD + N+VIQTAL
Subjt:  KCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

Q9LVC3 Pumilio homolog 128.7e-1939.01Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        + LF A  ++CV + TDR GC VLQ C+   Y E +   +L+  I  N+  LS++  GNYV+Q      +      I E+L+G + +LS     SNVVEK
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CL+L +D    +I+ EL+ N   +  V+ D +GN+VIQ AL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

Q9LXC5 Putative pumilio homolog 212.6e-0735.64Show/hide
Query:  LLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTA
        +   +  N+ +LS + +G +VVQ  +          IAERL+G F  L+    GS VVEKCL+   D   ++++EE   N      +  D FGNFV+Q+A
Subjt:  LLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTA

Query:  L
        L
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT1G22240.1 pumilio 81.9e-1334.75Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        + +F      C+ I T R GC VLQ CI  AY        L+  I  NS +L+++ +GNY VQ  +          +  +L+G + +LS     S++VE+
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CL  C +S   +IV EL+  P     ++QD + NFVIQ AL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

AT1G35750.1 pumilio 103.1e-1135.92Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQ-DCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVE
        + +  A    C  + T + GCYVLQ   I T  ++ +    L+  I  +S  LS++  GNYVVQC I   ++ V   +  R      +L+     S+V+E
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQ-DCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVE

Query:  KCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        KCLR   +S  E IV ELL  P     ++QD + N+VIQTAL
Subjt:  KCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

AT5G09610.1 pumilio 211.9e-0835.64Show/hide
Query:  LLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTA
        +   +  N+ +LS + +G +VVQ  +          IAERL+G F  L+    GS VVEKCL+   D   ++++EE   N      +  D FGNFV+Q+A
Subjt:  LLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTA

Query:  L
        L
Subjt:  L

AT5G56510.1 pumilio 126.2e-2039.01Show/hide
Query:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK
        + LF A  ++CV + TDR GC VLQ C+   Y E +   +L+  I  N+  LS++  GNYV+Q      +      I E+L+G + +LS     SNVVEK
Subjt:  QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEK

Query:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
        CL+L +D    +I+ EL+ N   +  V+ D +GN+VIQ AL
Subjt:  CLRLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL

AT5G60180.1 pumilio 192.1e-0731.65Show/hide
Query:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL
        L+  +  + + +  D+ GC  L D I  A  +      LL  +V N+  LS +  GN+VVQ  ++   +     IA  L G+  +LS    GS +VEK L
Subjt:  LFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCL

Query:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL
         + E+S V  +VE L  +   +  + ++ FGNFV+  AL
Subjt:  RLCEDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCTTCTTTTCAACGCAATGGCAAGTAATTGTGTAGCAATCGGCACCGATCGAGTGGGTTGTTATGTTCTACAGGATTGTATCTGCACAGCCTATATAGAAGCC
AAGCTTGTACCATATTTACTCCACAGCATCGTATTAAACTCACCCTATTTATCAGAAAACTTACACGGGAACTATGTGGTTCAGTGTGCAATTTCGTCGGGCATT
GCTTGTGTAAAACGAGGCATTGCGGAGCGGCTGCAGGGGAGATTCAAAGATCTTTCGAAGAGTATGGGCGGTAGCAATGTGGTGGAGAAGTGCTTGAGGTTGTGT
GAAGATTCTGAAGTTGAGAAGATTGTTGAGGAACTGTTGATGAACCCAACAGTTGTTCCCAATGTTGTTCAAGATGCTTTTGGCAACTTTGTTATTCAAACTGCT
CTT
mRNA sequenceShow/hide mRNA sequence
CAGCTTCTTTTCAACGCAATGGCAAGTAATTGTGTAGCAATCGGCACCGATCGAGTGGGTTGTTATGTTCTACAGGATTGTATCTGCACAGCCTATATAGAAGCC
AAGCTTGTACCATATTTACTCCACAGCATCGTATTAAACTCACCCTATTTATCAGAAAACTTACACGGGAACTATGTGGTTCAGTGTGCAATTTCGTCGGGCATT
GCTTGTGTAAAACGAGGCATTGCGGAGCGGCTGCAGGGGAGATTCAAAGATCTTTCGAAGAGTATGGGCGGTAGCAATGTGGTGGAGAAGTGCTTGAGGTTGTGT
GAAGATTCTGAAGTTGAGAAGATTGTTGAGGAACTGTTGATGAACCCAACAGTTGTTCCCAATGTTGTTCAAGATGCTTTTGGCAACTTTGTTATTCAAACTGCT
CTT
Protein sequenceShow/hide protein sequence
QLLFNAMASNCVAIGTDRVGCYVLQDCICTAYIEAKLVPYLLHSIVLNSPYLSENLHGNYVVQCAISSGIACVKRGIAERLQGRFKDLSKSMGGSNVVEKCLRLC
EDSEVEKIVEELLMNPTVVPNVVQDAFGNFVIQTAL