CuGenDBv2

Gene ID	MC10g0927
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	MC10:8014366..8018546
RNA-Seq Expression	MC10g0927
Synteny	MC10g0927
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

1.27e-195

88.71

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Query:  AATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAAQ+SSFR PLA+NL   SFH+ARFP SPSSP G+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI
        LVDFL+SSLRKVGNVTVSCTRIPLT LDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI

Query:  GEINSTKKGKFSVELIRYV
        GEIN TKKGKF++ELI+YV
Subjt:  GEINSTKKGKFSVELIRYV

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

1.14e-195

91.82

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Query:  ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG

Query:  EINSTKKGKFSVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFSVELIRYV

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

5.10e-219

100

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Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
        DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE

Query:  INSTKKGKFSVELIRYV
        INSTKKGKFSVELIRYV
Subjt:  INSTKKGKFSVELIRYV

XP_022142745.1 uncharacterized protein LOC111012786 isoform X2 [Momordica charantia]

1.35e-216

99.68

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Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
        DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLIS GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE

Query:  INSTKKGKFSVELIRYV
        INSTKKGKFSVELIRYV
Subjt:  INSTKKGKFSVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

3.17e-200

91.56

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Query:  MAATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIGA WSLRRAAQ+SSFR PLA+NL   SFH+ARFP SPSSP GSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLHTNF
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVP
        LTPPVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VP
Subjt:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVP

Query:  ELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Subjt:  ELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK

Query:  IGEINSTKKGKFSVELIRYV
        IGEINSTKKGKF+VELIRYV
Subjt:  IGEINSTKKGKFSVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

5.50e-196

91.82

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Query:  ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG

Query:  EINSTKKGKFSVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFSVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

3.70e-194

90.22

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Query:  TSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        T+IGALWSLR A+Q SSFR PL +NL+   FH+ RFP   SSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTP
Subjt:  TSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+VPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
        DFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE

Query:  INSTKKGKFSVELIRYV
        INSTKKGKF+VELIRYV
Subjt:  INSTKKGKFSVELIRYV

A0A6J1CLT4 uncharacterized protein LOC111012786 isoform X2

6.54e-217

99.68

Show/hide

Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
        DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLIS GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE

Query:  INSTKKGKFSVELIRYV
        INSTKKGKFSVELIRYV
Subjt:  INSTKKGKFSVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

2.47e-219

100

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Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
        DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Subjt:  DFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE

Query:  INSTKKGKFSVELIRYV
        INSTKKGKFSVELIRYV
Subjt:  INSTKKGKFSVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

5.04e-195

89.03

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Query:  AATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAAQ+SS R PLA+NLS   FH+ARFP SPSSP GSSG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPE
        TPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI
        LVDFL+SSL KVGNVTVSCTRIPLT LDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI

Query:  GEINSTKKGKFSVELIRYV
        GEIN TKKGKF+VELIRYV
Subjt:  GEINSTKKGKFSVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

2.5e-18

30.22

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGA
        T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+   E   
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGA

Query:  QVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVS
        Q+++  +  DF+ + L + G   VS  +I L+ L+      +  +   +SLR+DA+ ++  + SR K   L+ +G V+VNW  V      +  GD++S+ 
Subjt:  QVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVS

Query:  GKGRLKIGEI-NSTKKGKFSVELIR
        G GR  + +I   TKK K+ V   R
Subjt:  GKGRLKIGEI-NSTKKGKFSVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

3.7e-113

Show/hide

Query:  MAATSIGALWSLRRAA---QASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MA TS+   W + R A    A+S  +             P S      +   C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+F
Subjt:  MAATSIGALWSLRRAA---QASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVP
        LTPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI++Q E GAQV++VP
Subjt:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVP

Query:  ELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK
        ELVDF++++L KVGNV V+C++IPL AL+YEPP+T +F T+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  VTKNGT +KTGDVVSVSGKGRLK
Subjt:  ELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK

Query:  IGEINSTKKGKFSVELIRYV
        IGEIN TKKGKF+VE+IRY+
Subjt:  IGEINSTKKGKFSVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCTACGAGCATCGGAGCTCTGTGGAGTCTCAGAAGAGCAGCTCAAGCTTCGAGTTTCCGCATTCCCCTTGCCCTAAACCTCTCCTTCCACCAGGCCCGTTTTCC
TCCTTCGCCGTCTTCTCCTCCGGGGTCGTCAGGAATATGTCAATTAGTGCAAGCTGTAAAAGGAGACATTGATGTTTTACTCAACGGAGTAGGAGATAAAGGTGTTATTG
TAGATGTGAAGCATATTCTTGTGATGGCCAAACGTTCATTGTCAAGACGAGAAGTTCTCCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATA
CAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAAT
TTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACACGGGGACTTCCTTGGATCAATTCTTGGTACAGGAATTGCTAGGGAAAAGCTTGGCGATATCA
TACTCCAGGGAGAAAATGGAGCTCAAGTAGTACTTGTTCCAGAACTCGTCGACTTCCTTATATCGTCACTGCGCAAGGTTGGTAATGTCACAGTTTCTTGTACGAGGATT
CCGTTGACAGCTCTTGATTATGAACCACCAAAGACTAAGACATTTAACACCATTGAGGCATCTCTTAGGGTGGATGCTATAGCAAGTGCTGGGTTCAAGATTTCACGGTC
CAAACTAGTGGATTTAATCAGCAGTGGTGATGTTCGTGTCAATTGGACACCGGTTACAAAAAATGGAACCACACTGAAGACTGGTGATGTTGTTTCTGTTAGTGGTAAAG
GCAGACTAAAGATTGGAGAAATAAATTCTACGAAAAAAGGGAAATTTTCTGTTGAGCTTATCAGGTACGTGTAA

mRNA sequence

Show/hide mRNA sequence

GCAGAAAATAATCAAGTTCGCGTACCACTAACAATGGCCGCTACGAGCATCGGAGCTCTGTGGAGTCTCAGAAGAGCAGCTCAAGCTTCGAGTTTCCGCATTCCCCTTGC
CCTAAACCTCTCCTTCCACCAGGCCCGTTTTCCTCCTTCGCCGTCTTCTCCTCCGGGGTCGTCAGGAATATGTCAATTAGTGCAAGCTGTAAAAGGAGACATTGATGTTT
TACTCAACGGAGTAGGAGATAAAGGTGTTATTGTAGATGTGAAGCATATTCTTGTGATGGCCAAACGTTCATTGTCAAGACGAGAAGTTCTCCATACGAACTTTCTCACC
CCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCA
TGCAGATGAACTAACAAGTGATCCAGACATAATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACACGGGGACTTCCTTGGATCAATTCTTGGTA
CAGGAATTGCTAGGGAAAAGCTTGGCGATATCATACTCCAGGGAGAAAATGGAGCTCAAGTAGTACTTGTTCCAGAACTCGTCGACTTCCTTATATCGTCACTGCGCAAG
GTTGGTAATGTCACAGTTTCTTGTACGAGGATTCCGTTGACAGCTCTTGATTATGAACCACCAAAGACTAAGACATTTAACACCATTGAGGCATCTCTTAGGGTGGATGC
TATAGCAAGTGCTGGGTTCAAGATTTCACGGTCCAAACTAGTGGATTTAATCAGCAGTGGTGATGTTCGTGTCAATTGGACACCGGTTACAAAAAATGGAACCACACTGA
AGACTGGTGATGTTGTTTCTGTTAGTGGTAAAGGCAGACTAAAGATTGGAGAAATAAATTCTACGAAAAAAGGGAAATTTTCTGTTGAGCTTATCAGGTACGTGTAAGCT
CTGGCGTTATTGGATCGTTTCGAGTTGAACCAAGTAAGATATCAGTAGCAAAAGCTCCCTCATGAACATCATGATTCCTTCTTTGGGAAGAAGGAAGGTAAGTCACTGTT
CAACATGACACGAACCTGATTGTACATAAAATCTGAACATCCATTCATCCATTCTTAAAAATTTTGCATTTGGAAAATTTATCTCTTCACATTTCTATGCCGGGAAATAT
TGGTTCTTTTGTCTTTGGGATGTGTGATTTTATGTCCCTGGAATGGAATTTATTATGCAAATTAATGTTGTCAAAGGGAGGGAATGTAAATACAAAAGTTATAGCTTCGC
AGTAACTATTTGTAGATCCAATGATATTTGACCTATTTCCATCCCGTAATATGCAGTTATTAATGTATATTGGTTGGTGTACAACTATCAATTTTTGTTAATTACTGATT
TAGTTTTCAA

Protein sequence

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MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAI
QKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRI
PLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKFSVELIRYV

MC10g0927 (gene) of Bitter gourd (Dali-11) v1 genome