CuGenDBv2

Gene ID	MC10g1050
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S4
Genome location	MC10:10499511..10499774
RNA-Seq Expression	MC10g1050
Synteny	MC10g1050
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR022801 - Ribosomal protein S4/S9 IPR036986 - RNA-binding S4 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAW47278.1 ribosomal protein S4, partial [Lonicera sp. Bergthorsson 0301]

6.50e-44

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

ALE29211.1 ribosomal protein S4, partial [Heuchera parviflora var. saurensis]

1.97e-43

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

WP_131747055.1 hypothetical protein [Candidatus Frankia meridionalis]

8.09e-44

87.5

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVNKGMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

YP_009711332.1 ribosomal protein S4 [Rhaphiolepis bibas]

1.27e-43

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

YP_009913620.1 ribosomal protein S4 [Luffa acutangula]

4.97e-45

88.64

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHFSETIPQARQ ISH RVCVNKGMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

TrEMBL top hits

e value

%identity

Alignment

A0A0M4MT62 Ribosomal protein S4 (Fragment)

9.54e-44

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

A0A5Q3A4G2 Ribosomal protein S4

6.13e-44

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

A0A7D6BZG8 Ribosomal protein S4

2.40e-45

88.64

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHFSETIPQARQ ISH RVCVNKGMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

A0A7L9QAE9 Ribosomal protein S4

1.21e-43

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQLQTTR L LFHGDL ITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

Q5IA04 Ribosomal protein S4 (Fragment)

3.15e-44

86.36

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISH RVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

SwissProt top hits

e value

%identity

Alignment

P26866 Ribosomal protein S4, mitochondrial

6.8e-14

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Query:  NIQLQTTRNLSLFHGDLPITEMHRGTERT---SYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        +IQLQT + LSLF+G+LPI +M R    T     N    N+E R DVI VRL+F  T+ QARQ ISH  +CVN   V+I  F+VS G+
Subjt:  NIQLQTTRNLSLFHGDLPITEMHRGTERT---SYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

Q31708 Ribosomal protein S4, mitochondrial

2.3e-33

79.55

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        L S IQLQTTR L  F+GDLPITEMHRGT+RTSY PF LNLETR DVIP+RL+F ETIPQARQ ISH RVCVNKGMVSITHFK+S+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

Arabidopsis top hits

e value

%identity

Alignment

AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

7.7e-37

82.95

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        L S IQLQTTR L LFHGDLPITEMHRGT+RTSY PFPLN ETR DVIP+RLHF ETIPQARQ ISH RVCVNKGMVSITHFK+S+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

ATMG00290.1 mitochondrial ribosomal protein S4

7.7e-37

82.95

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Query:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE
        L S IQLQTTR L LFHGDLPITEMHRGT+RTSY PFPLN ETR DVIP+RLHF ETIPQARQ ISH RVCVNKGMVSITHFK+S+G+
Subjt:  LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

Sequences

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CDS sequence

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CTTAACAGTAACATCCAATTACAAACTACACGAAATTTGTCCCTTTTTCATGGGGATTTACCGATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATAACCCTTT
TCCACTCAATCTAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATA
AGGGAATGGTAAGCATTACTCATTTTAAAGTGTCGTACGGTGAG

mRNA sequence

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Protein sequence

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LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

MC10g1050 (gene) of Bitter gourd (Dali-11) v1 genome