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MC10g1087 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g1087
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibosomal protein S12
Genome locationMC10:11942944..11943098
RNA-Seq ExpressionMC10g1087
SyntenyMC10g1087
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_042751547.1 ribosomal protein S12, mitochondrial-like [Lactuca sativa]2.67e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
XP_042753278.1 ribosomal protein S12, mitochondrial-like [Lactuca sativa]3.07e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
YP_006280933.1 ribosomal protein S12 [Spirodela polyrhiza]2.82e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
YP_009565395.1 ribosomal protein S12 [Morus notabilis]4.91e-2081.82Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        RRD T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
YP_009640769.1 ribosomal protein S12 [Lactuca serriola]3.79e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
TrEMBL top hitse value%identityAlignment
A0A411GRT7 Ribosomal protein S122.38e-2081.82Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        RRD T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
A0A4D6PU26 Ribosomal protein S121.83e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
A0A4D6PZ31 Ribosomal protein S121.83e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
A0A6B9SBX3 Ribosomal protein S121.83e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
I1VWK1 Ribosomal protein S121.36e-1980Show/hide
Query:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRPL----EPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial3.6e-1576.36Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRL+NRHDIF HI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
P60096 Ribosomal protein S12, mitochondrial4.2e-1680Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
P60097 Ribosomal protein S12, mitochondrial4.2e-1680Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+ASDQCPQKQGVRP      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
P68535 Ribosomal protein S12, mitochondrial1.8e-1476.36Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+A DQCPQKQGV P      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
Q95869 Ribosomal protein S12, mitochondrial1.8e-1476.36Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+A DQCPQKQGV P      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.8e-1472.73Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+A D+CPQK GV P      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
ATCG00065.1 ribosomal protein S12A5.0e-0448.89Show/hide
Query:  CPQKQG----VRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        CPQ++G    V  + PKK NSA RK+A+VRL++  +I A+I G G
Subjt:  CPQKQG----VRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
ATCG00905.1 ribosomal protein S12C5.0e-0448.89Show/hide
Query:  CPQKQG----VRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        CPQ++G    V  + PKK NSA RK+A+VRL++  +I A+I G G
Subjt:  CPQKQG----VRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
ATCG01230.1 ribosomal protein S12B5.0e-0448.89Show/hide
Query:  CPQKQG----VRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        CPQ++G    V  + PKK NSA RK+A+VRL++  +I A+I G G
Subjt:  CPQKQG----VRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
ATMG00980.1 Ribosomal protein S12/S23 family protein1.8e-1472.73Show/hide
Query:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG
        R D T+A D+CPQK GV P      PKK NSAPRKIAKVRLSNRHDIFAHI GEG
Subjt:  RRDHTQASDQCPQKQGVRP----LEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAGGGATCATACTCAAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCTTGAGCCAAAAAAATCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTT
GAGCAATCGACATGATATATTTGCTCACATTTCGGGCGAAGGT
mRNA sequenceShow/hide mRNA sequence
AGGAGGGATCATACTCAAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCTTGAGCCAAAAAAATCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTT
GAGCAATCGACATGATATATTTGCTCACATTTCGGGCGAAGGT
Protein sequenceShow/hide protein sequence
RRDHTQASDQCPQKQGVRPLEPKKSNSAPRKIAKVRLSNRHDIFAHISGEG