; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC10g1267 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g1267
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationMC10:16100431..16103194
RNA-Seq ExpressionMC10g1267
SyntenyMC10g1267
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596894.1 hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia]6.67e-8277.6Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL LERK+L SSSLESSLLVCKK+STSK+PCRNEKPIT  A KSQVLGRVKDFLGV+SEANKKLQLDAKD++EKYDIEAL+G+ESEVIE+DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSS--ESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAVAAAESAI+GNQPVIPL CSSSS  ESESEESS DSI+SD++ +D++K  NQNSD  NR SV  KRSKS++T+  S+SK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSS--ESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]4.11e-8177.37Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL+LERK+LS+SSLESSLLVCKK+STSK+PCRNEKPIT  ASKS VLGRV+DFLGVISEANKKLQ+D+K+N++KYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAVAAAESAI+GN PVIPLTCSSS ESESEESS DSI+SD D +D++K  +QN+D SNR SV  KRS S+K S  SKSK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

XP_022155495.1 uncharacterized protein LOC111022627 [Momordica charantia]5.68e-114100Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]8.16e-8276.68Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL LERK+L SSSLESSLLVCKK+STSK+PCRNEKPIT  A KSQVLGRVKDFLGV+SEANKKLQLDAKD++EKYDIEAL+G+ESEVIE+DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCS---SSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAVAAAESAI+GNQPVIPL CS   SSSESESEE+S DSI+SD++ DD++K  N+N+D  NR SV  KRSKS+KT+  S+SK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCS---SSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]4.16e-8882.98Show/hide
Query:  RASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLMLG
        R SKDLLYLERK+LSSSSLESSLLVCKK+STSK+P RNEKPIT  ASKS VLGRVKDFLGVISEANKKLQ+DAKDN+EKYDIEALDGNES+VIE+DLMLG
Subjt:  RASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLMLG

Query:  VADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        +ADLHTPEAVAAAESAI+GNQPVIPLTCSSSSESESEESS DSI+S+D+ DD++K  +QN+DHSNRSSV  KRS S+KTS  SKSK K
Subjt:  VADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein4.00e-8178.42Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+  SKDLLYLERK+LSSSSLESSLLVCKK+STSK P RNEKPIT  ASKS VLGRVKDFLGVISEANKKLQ+D+K+N+EKYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAV AAESAI+GN PVIPLTCSSS ESESEESS DSI+SD D DD++K  +Q +D SNR SV  KRS S+KTS  SKSK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

A0A1S3BJW4 uncharacterized protein LOC1034908381.99e-8177.37Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL+LERK+LS+SSLESSLLVCKK+STSK+PCRNEKPIT  ASKS VLGRV+DFLGVISEANKKLQ+D+K+N++KYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAVAAAESAI+GN PVIPLTCSSS ESESEESS DSI+SD D +D++K  +QN+D SNR SV  KRS S+K S  SKSK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF341.99e-8177.37Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL+LERK+LS+SSLESSLLVCKK+STSK+PCRNEKPIT  ASKS VLGRV+DFLGVISEANKKLQ+D+K+N++KYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAVAAAESAI+GN PVIPLTCSSS ESESEESS DSI+SD D +D++K  +QN+D SNR SV  KRS S+K S  SKSK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

A0A6J1DMK4 uncharacterized protein LOC1110226272.75e-114100Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

A0A6J1F913 uncharacterized protein LOC111443185 isoform X13.61e-8076.56Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL LERK+L SSS ESSLLVCKK+STSK+PCRNEKPIT  A KSQVLGRVKDFLGV+SEANKKLQLDAKD++EKYDIEAL+G+ESEVIE+DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSS--ESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK
        LG+ADLHTPEAVAAAESAI+GNQPVI L CSSSS  ESESEESS DSI+SD++ DD++K  NQN+D  NR SV  KR KS+KT+  S+SK K
Subjt:  LGVADLHTPEAVAAAESAIVGNQPVIPLTCSSSS--ESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein2.6e-2248.86Show/hide
Query:  KDLLYLERKNLSSSS-LESSLLVCKKDSTSKQPCR---NEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLML
        KDLL LE KN SSSS ++S+LL+C   +  K+        KP      KSQ+LG++K FLGV++EANKK    ++ N E Y+IEAL GNESE+IEMDLML
Subjt:  KDLLYLERKNLSSSS-LESSLLVCKKDSTSKQPCR---NEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLML

Query:  GVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSK
        GVADL+TPEAV+AAE+AI G  P                 SGDS SSDD+ D + +G    S   +R     KRSK
Subjt:  GVADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCGCGCCAGCAAGGATCTTTTGTATTTGGAGCGGAAGAATTTATCCTCTTCATCCCTAGAGTCCTCACTGCTAGTCTGTAAAAAGGACTCAACTTCCAAGCAGCC
CTGTCGGAATGAAAAACCCATTACAAATTCGGCTTCAAAAAGCCAAGTGTTGGGAAGAGTCAAAGACTTCTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAACTGG
ATGCAAAGGACAATTCTGAAAAATATGATATTGAAGCACTTGATGGCAATGAATCAGAAGTTATTGAAATGGATTTGATGTTGGGTGTTGCCGATCTTCATACTCCTGAA
GCTGTGGCTGCTGCTGAATCTGCAATAGTTGGTAATCAGCCGGTGATTCCTTTGACTTGTAGTAGTAGTAGTGAATCGGAGTCTGAAGAGAGTAGTGGTGATAGTATTAG
CAGCGACGACGATAAAGATGACGATGACAAGGGTCACAATCAGAATAGTGACCACAGTAACAGATCATCAGTTAACTTCAAAAGATCCAAGTCCAAAAAAACCAGTCGTT
CAAGTAAAAGCAAAAGAAAAGTTTCAAGGTTTGGTTCACTGGGAGTATATGAAGTTTTCTGGGGCTTGCATAGACAAAATCACCAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAAAGAAAGAGAGAGAGAGAGAGTCTAAACCTAAACCTATAATTTTGGAGGAAATTGTGCTCCAAATAAAACCCTCCGTCGTCTCTCGAAACCAATTTCCCGGTTCC
GTTACTTCTTCTCAGTCACCGGAGACAGCTGCCGGCTGACGCCCGGCCTTAACTGTTTCTCTCGTACAGAACACAAATCCTAGAAGAAGCGAGGATGCAGCGCGCCAGCA
AGGATCTTTTGTATTTGGAGCGGAAGAATTTATCCTCTTCATCCCTAGAGTCCTCACTGCTAGTCTGTAAAAAGGACTCAACTTCCAAGCAGCCCTGTCGGAATGAAAAA
CCCATTACAAATTCGGCTTCAAAAAGCCAAGTGTTGGGAAGAGTCAAAGACTTCTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAACTGGATGCAAAGGACAATTC
TGAAAAATATGATATTGAAGCACTTGATGGCAATGAATCAGAAGTTATTGAAATGGATTTGATGTTGGGTGTTGCCGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTG
AATCTGCAATAGTTGGTAATCAGCCGGTGATTCCTTTGACTTGTAGTAGTAGTAGTGAATCGGAGTCTGAAGAGAGTAGTGGTGATAGTATTAGCAGCGACGACGATAAA
GATGACGATGACAAGGGTCACAATCAGAATAGTGACCACAGTAACAGATCATCAGTTAACTTCAAAAGATCCAAGTCCAAAAAAACCAGTCGTTCAAGTAAAAGCAAAAG
AAAAGTTTCAAGGTTTGGTTCACTGGGAGTATATGAAGTTTTCTGGGGCTTGCATAGACAAAATCACCAAGGTTGACCGCCCGCCGAGTCCTTTAGCAGCTCGGGTAGGC
AGCAATTTTGCTCGAACTTGTGATTTCAAGTTATTTCTTCCTTCACCTTTTATCATGAGTGCAAGTGCTTTTGCTTGGGAGAGGGAATAGGTGCTGTTTTATACATTTCT
ATTTAGGAACTGGAATATAATTAAGTTGTTGGAATTTTCCTTGGTCAGTTTTCCAATGTTGTTTTTATACTTGATGTCTAATAGCCAAATTAAGAGATTTTTGTTCTTTT
CATTTCACTAGAGCATGAACATACTCTCTTCTCTCACATATTGTCCTGGTTTTCGAAGGAGTAGTTCGGTAGTTTTCAGTTAAAATCGTGCTCAAGGGATTCTTCTTCTG
GGTATGACAAGTTTGTTTTCATGTTGTGGTTTTGGATTTTGTTTCAACAAAAATTATCCTTTCAAGTAGTGAAGGGTGCAGAGAAATCTTTTCAGCCAACCATTTGCTTC
CTGATATTTTGTTGTTCCTTTTTGAGTCGTGGGGGTTTTTTCTTCTTCTTAATGTTGAACCAATCTTGTCACAATTGGTTGGTGATGTGGAATTGTGTTATTGATTGTGC
TATGTTTAGATTGACATTTCTCTTTTCAAGTTCTAGTCTCTAAATTTTTGTTAGATATTTAATCTTAGCATAAGAATTCTG
Protein sequenceShow/hide protein sequence
MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLMLGVADLHTPE
AVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKVSRFGSLGVYEVFWGLHRQNHQG