; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC10g1404 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g1404
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptioncold shock domain-containing protein 3
Genome locationMC10:17443320..17444102
RNA-Seq ExpressionMC10g1404
SyntenyMC10g1404
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596667.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]4.99e-16492.45Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG
        GG  WRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G CYNCGGFGHLARDCNRGGAG
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

KAG7028203.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.61e-16292.45Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG
        GG  WRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G CYNCGGFGHLARDCNRGGAG
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_022145255.1 cold shock domain-containing protein 3 [Momordica charantia]3.65e-184100Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFG
        MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFG

Query:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG
        GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG
Subjt:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_022948847.1 cold shock protein 1-like [Cucurbita moschata]3.78e-16191.7Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF
        M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG
        GG  WRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G CYNCGGFGHLARDCNRGGAG
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGSGG GGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_023540854.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]2.97e-16191.39Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG
        GG  WRGGDRRNGSSGAGG GCY CGEQGHLARDC R SNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G CYNCGGFGHLARDCNRGGAG
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGG--CFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGSGGGGGGG  CFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGSGGGGGGG--CFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

TrEMBL top hitse value%identityAlignment
A0A1S3BKK1 cold shock domain-containing protein 37.82e-16188.64Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-----
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVV+LDGSSGNRRDNFGGGGGG GGRGG     
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-----

Query:  --GYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAG--ACYNCGGFGHLAR
          GYGFGG  WRGGDRRNG+SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGE+GHLARDCPRGNSGGGGG G+G  ACYNCGGFGHLAR
Subjt:  --GYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAG--ACYNCGGFGHLAR

Query:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA
        DCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR SGG G RFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA

A0A5D3CJR2 Cold shock domain-containing protein 37.82e-16188.64Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-----
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVV+LDGSSGNRRDNFGGGGGG GGRGG     
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-----

Query:  --GYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAG--ACYNCGGFGHLAR
          GYGFGG  WRGGDRRNG+SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGE+GHLARDCPRGNSGGGGG G+G  ACYNCGGFGHLAR
Subjt:  --GYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAG--ACYNCGGFGHLAR

Query:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA
        DCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR SGG G RFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA

A0A6J1CTY3 cold shock domain-containing protein 31.77e-184100Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFG
        MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFG

Query:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG
        GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG
Subjt:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

A0A6J1GAE9 cold shock protein 1-like1.83e-16191.7Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF
        M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG
        GG  WRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G CYNCGGFGHLARDCNRGGAG
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGSGG GGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

E5RDD6 Cold-shock DNA-binding family protein7.82e-16188.64Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-----
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVV+LDGSSGNRRDNFGGGGGG GGRGG     
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-----

Query:  --GYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAG--ACYNCGGFGHLAR
          GYGFGG  WRGGDRRNG+SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGE+GHLARDCPRGNSGGGGG G+G  ACYNCGGFGHLAR
Subjt:  --GYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAG--ACYNCGGFGHLAR

Query:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA
        DCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR SGG G RFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 12.2e-5248.97Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFG---
        R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V +  G S  + +N  G G  RGG G G Y  G   
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFG---

Query:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEIGHLARDCPRGNSGGGGGAGA-----GACYNCGG
                G G  GG+RR+     GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG++GH+ARDC + + G G   GA       CY CG 
Subjt:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEIGHLARDCPRGNSGGGGGAGA-----GACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC
         GH ARDC +  A G   SGGGG G C++CG  GH+AR+C  + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC

P27484 Glycine-rich protein 21.3e-3948.28Show/hide
Query:  MAEE---RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGY
        MAEE   R  G V+WFSD KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++       GGGGGGRG  GGGY
Subjt:  MAEE---RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGY

Query:  GFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGG
        G GGSG  GG  R GS                          RG GGG G +                 GGGGG G G+ Y  GG G+       GG  G
Subjt:  GFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF-GGGGGGGSNTCFNCGKSGHFAREC
        G G GGG GCF CGE GH AR+C ++S   GG GRF GGGGGGG   C+ CG+ GHFAREC
Subjt:  GSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF-GGGGGGGSNTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 42.2e-3147.73Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGRGGRGGGYGFGG
        +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN      GGGG  GGRG   GFGG
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGRGGRGGGYGFGG

Query:  SGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGG
         G RGG R  GS G GG G    G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G                R G+GGG GG
Subjt:  SGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGG

Query:  GGGG-GCFNCGEYGHLAREC
        GGGG  C++CGE GH AR+C
Subjt:  GGGG-GCFNCGEYGHLAREC

Q41188 Cold shock protein 21.8e-3345.89Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGRGGRG
        ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+         S   R  FGGG GG  G G
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGRGGRG

Query:  GGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGG
        GGYG GG G+ G     G  G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G G  Y  GG G+        G
Subjt:  GGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGG

Query:  AGGGSGGGGGGGCFNCGEYGHLARECPNESR
         GG  GGGGGG C++CGE GH AR+C +  R
Subjt:  AGGGSGGGGGGGCFNCGEYGHLARECPNESR

Q94C69 Cold shock domain-containing protein 34.8e-5549.33Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGR--------------
        R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV +  G S N+++N   G GG               
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGR--------------

Query:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEIGHLARDCPRGNS----GGGGGAGAG--ACYNC
         G  GG  FGG    GG RR+G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGE+GHLA+DC  G+     GGGGG G+G   CY C
Subjt:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEIGHLARDCPRGNS----GGGGGAGAG--ACYNC

Query:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC
        GG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Subjt:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 33.4e-5649.33Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGR--------------
        R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV +  G S N+++N   G GG               
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGR--------------

Query:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEIGHLARDCPRGNS----GGGGGAGAG--ACYNC
         G  GG  FGG    GG RR+G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGE+GHLA+DC  G+     GGGGG G+G   CY C
Subjt:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEIGHLARDCPRGNS----GGGGGAGAG--ACYNC

Query:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC
        GG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Subjt:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC

AT2G21060.1 glycine-rich protein 2B1.5e-3247.73Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGRGGRGGGYGFGG
        +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN      GGGG  GGRG   GFGG
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGRGGRGGGYGFGG

Query:  SGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGG
         G RGG R  GS G GG G    G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G                R G+GGG GG
Subjt:  SGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGG

Query:  GGGG-GCFNCGEYGHLAREC
        GGGG  C++CGE GH AR+C
Subjt:  GGGG-GCFNCGEYGHLAREC

AT2G36120.1 Glycine-rich protein family4.6e-0543.48Show/hide
Query:  GSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAG
        G+ G+   + GGGGG  GG GGG G GG G  GG    GS   GGAG Y  GE G            GGGGGGG    G  G  A     G  GGG GAG
Subjt:  GSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAG

Query:  AGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEY--GHLARECPNESRNSG-GTGRFGGGGGGGSNTCFNCGKSGHFA
        AG  Y  GG G      + GG GGG+GGGGGGG    G +  G+ A     E    G G G  GGGGGGG  +    G  G +A
Subjt:  AGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEY--GHLARECPNESRNSG-GTGRFGGGGGGGSNTCFNCGKSGHFA

AT4G36020.1 cold shock domain protein 11.6e-5348.97Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFG---
        R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V +  G S  + +N  G G  RGG G G Y  G   
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFG---

Query:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEIGHLARDCPRGNSGGGGGAGA-----GACYNCGG
                G G  GG+RR+     GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG++GH+ARDC + + G G   GA       CY CG 
Subjt:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEIGHLARDCPRGNSGGGGGAGA-----GACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC
         GH ARDC +  A G   SGGGG G C++CG  GH+AR+C  + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC

AT4G38680.1 glycine rich protein 21.3e-3445.89Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGRGGRG
        ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+         S   R  FGGG GG  G G
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGRGGRG

Query:  GGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGG
        GGYG GG G+ G     G  G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G G  Y  GG G+        G
Subjt:  GGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGG

Query:  AGGGSGGGGGGGCFNCGEYGHLARECPNESR
         GG  GGGGGG C++CGE GH AR+C +  R
Subjt:  AGGGSGGGGGGGCFNCGEYGHLARECPNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTC
GATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATG
GATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGG
AACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGG
GTGTTTCACTTGCGGTGAGATTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTG
GGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGCGGAAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACATTTGGCTAGAGAATGC
CCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCAAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTG
TCCTGATGCACCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTC
GATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATG
GATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGG
AACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGG
GTGTTTCACTTGCGGTGAGATTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTG
GGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGCGGAAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACATTTGGCTAGAGAATGC
CCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCAAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTG
TCCTGATGCACCT
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRR
NGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAREC
PNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP