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MC10g1417 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g1417
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationMC10:17528162..17528319
RNA-Seq ExpressionMC10g1417
SyntenyMC10g1417
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011260 - RNA polymerase, alpha subunit, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AWT40598.1 RNA polymerase alpha subunit [Cercis chuniana]3.17e-1369.81Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TL +LL+NS ++LMKI+H+CIE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
QWQ50130.1 RNA polymerase alpha subunit [Cyclanthera pedata]3.26e-1371.7Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL+NS DEL+K+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
YP_009751938.1 RNA polymerase subunit alpha [Cyclanthera pedata]3.12e-1371.7Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL+NS DEL+K+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
YP_009752952.1 RNA polymerase subunit alpha [Momordica sessilifolia]2.28e-1373.58Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL+NS DELMK+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
YP_009753121.1 RNA polymerase subunit alpha [Corallocarpus boehmii]3.16e-1373.58Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL NS DELMK+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
TrEMBL top hitse value%identityAlignment
A0A2H4NWQ3 DNA-directed RNA polymerase subunit alpha2.18e-1369.81Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        KI LKYIFIDQL+LP RIYNCLK S I TL +LL+N+ ++LMKI+H+CIE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
A0A3S7M8S8 DNA-directed RNA polymerase subunit alpha1.54e-1369.81Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TL +LL+NS ++LMKI+H+CIE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
A0A6H0ETQ7 DNA-directed RNA polymerase subunit alpha1.51e-1371.7Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL+NS DEL+K+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
A0A6H0EW33 DNA-directed RNA polymerase subunit alpha1.53e-1373.58Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL NS DELMK+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
A0A6H0EWH8 DNA-directed RNA polymerase subunit alpha1.11e-1373.58Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQL+LP RIYNCLK S I TLF+LL+NS DELMK+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
SwissProt top hitse value%identityAlignment
A0ZZ67 DNA-directed RNA polymerase subunit alpha2.1e-1064.15Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQ +LP RIYNCLK S I TL +LL+NS ++LMK++H+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
A8SED5 DNA-directed RNA polymerase subunit alpha2.1e-1065.38Show/hide
Query:  ITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        I LK IFIDQL+LP R YNCLK S I TLF+LLSNS ++LM+I+H+ +E+VK
Subjt:  ITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
P06505 DNA-directed RNA polymerase subunit alpha3.2e-1166.04Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        KI LK+IFIDQL+LP RIYNCLK S I TL +LL+NS ++L+K+KH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
Q2L938 DNA-directed RNA polymerase subunit alpha9.3e-1166.04Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQ +LP RIYNCLK S I TL +LL+NS ++LMKI+H+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
Q4VZK3 DNA-directed RNA polymerase subunit alpha1.7e-1271.7Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLK-WSIRTLFNLLSNSSDELMKIKHYCIENVK
        +I LKYIFIDQ +LP RIYNCLK  +I TLF+LL+NS DELMKIKH+ IE+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLK-WSIRTLFNLLSNSSDELMKIKHYCIENVK
Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha5.6e-1158.49Show/hide
Query:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK
        ++  +YIFIDQL+LP RIYNCLK S I TL +LL+NS ++L+KI+H+ +E+VK
Subjt:  KITLKYIFIDQLKLPLRIYNCLKWS-IRTLFNLLSNSSDELMKIKHYCIENVK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAATAACATTAAAATATATTTTTATTGACCAATTAAAATTGCCTCTTAGGATCTATAATTGCCTAAAATGGTCAATACGTACTTTATTTAACCTTTTGAGTAACAGTTC
AGACGAACTTATGAAAATAAAACATTATTGCATAGAAAACGTAAAA
mRNA sequenceShow/hide mRNA sequence
AAAATAACATTAAAATATATTTTTATTGACCAATTAAAATTGCCTCTTAGGATCTATAATTGCCTAAAATGGTCAATACGTACTTTATTTAACCTTTTGAGTAACAGTTC
AGACGAACTTATGAAAATAAAACATTATTGCATAGAAAACGTAAAA
Protein sequenceShow/hide protein sequence
KITLKYIFIDQLKLPLRIYNCLKWSIRTLFNLLSNSSDELMKIKHYCIENVK