; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC10g1427 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g1427
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionE3 ubiquitin-protein ligase SDIR1-like
Genome locationMC10:17614462..17614881
RNA-Seq ExpressionMC10g1427
SyntenyMC10g1427
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052944.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]3.08e-5767.32Show/hide
Query:  MVFNRVFFFFYN-FIGFRGRP-KLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSI-------EEGIE--TSVLPCLHEFHK
        MVFN+VFFFFYN FIGFR RP + KQ T LPHGG+S+LR M  D+  I   + LSS  KALEGE CC VCLSS+       ++G+   TSVLPCLHEFHK
Subjt:  MVFNRVFFFFYN-FIGFRGRP-KLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSI-------EEGIE--TSVLPCLHEFHK

Query:  VCVDRWFEERRRTCPICRYSMEGAGQGN--ENGTQILTDEMVIWFSSFHTSGF
        VCV+RWFEE RRTCPICRYSMEG G G+  +   QILTDEMVIWFSSFHTSGF
Subjt:  VCVDRWFEERRRTCPICRYSMEGAGQGN--ENGTQILTDEMVIWFSSFHTSGF

KAG6577791.1 Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]2.01e-5666.89Show/hide
Query:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVT-LSSSGKALEGEMCCCVCLSSI-----EEGIETSVLPCLHEFHKVCVD
        MVFN++FFFFYN  IGFR  P LKQ T LP   DS+LR M  D     DCV  LSS  KALEGE CC VCLS +     +EGI TSVLPC HEFHK+C+D
Subjt:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVT-LSSSGKALEGEMCCCVCLSSI-----EEGIETSVLPCLHEFHKVCVD

Query:  RWFEERRRTCPICRYSMEGAGQGNENGT-QILTDEMVIWFSSFHTSGF
        RWFEE RRTCPICRYSMEG G  +E+G+ ++LTDEMVIWFSSFHTSGF
Subjt:  RWFEERRRTCPICRYSMEGAGQGNENGT-QILTDEMVIWFSSFHTSGF

KAG7015830.1 Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]1.65e-5566.22Show/hide
Query:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVT-LSSSGKALEGEMCCCVCLSSI-----EEGIETSVLPCLHEFHKVCVD
        MVFN++FFFFYN  IGFR  P LKQ T LP   DS+LR    D     DCV  LSS  KALEGE CC VCLS +     +EGI TSVLPC HEFHK+C+D
Subjt:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVT-LSSSGKALEGEMCCCVCLSSI-----EEGIETSVLPCLHEFHKVCVD

Query:  RWFEERRRTCPICRYSMEGAGQGNENGT-QILTDEMVIWFSSFHTSGF
        RWFEE RRTCPICRYSMEG G  +E+G+ ++LTDEMVIWFSSFHTSGF
Subjt:  RWFEERRRTCPICRYSMEGAGQGNENGT-QILTDEMVIWFSSFHTSGF

XP_022145297.1 E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia]4.11e-101100Show/hide
Query:  MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERR
        MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERR
Subjt:  MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERR

Query:  RTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
        RTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
Subjt:  RTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

XP_038906276.1 E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]5.92e-5967.33Show/hide
Query:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEE---------GIETSVLPCLHEFHKV
        MVFN+VFFFFYN F+GFR R + KQ T LPHGG+ +LR +  D+  I   VTLSS  KALEGE CC VCLSS+           G  TSVLPCLHEFHKV
Subjt:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEE---------GIETSVLPCLHEFHKV

Query:  CVDRWFEERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
        CVDRWFEE RRTCPICRYSMEG G   +   QILTDEMVIWFSSFHTSGF
Subjt:  CVDRWFEERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

TrEMBL top hitse value%identityAlignment
A0A0A0L4W7 RING-type domain-containing protein2.20e-5865.54Show/hide
Query:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSI-------EEGIETSVLPCLHEFHKVCV
        M+FN+VFFFFYN  IGFR RP+ KQ T LP  G+S+LR +  D+  I   + LSS  KALEGE CC VCLSS+       ++G+ TSVLPCLHEFHKVCV
Subjt:  MVFNRVFFFFYN-FIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSI-------EEGIETSVLPCLHEFHKVCV

Query:  DRWFEERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
        +RWFEE RRTCPICRYSMEG G   +   QILTDEMVIWFSSFHTSGF
Subjt:  DRWFEERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

A0A2I4FD42 E3 ubiquitin-protein ligase RNF165-like3.08e-3347.89Show/hide
Query:  MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDS--TLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEE
        M F ++  F Y+F+G R +P LK      + G     L+++ ED    P   + S S + LE E CC VCLS +++G +T  LPCLHEFHKVCVDRWF+ 
Subjt:  MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDS--TLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEE

Query:  RRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
         R+TCP+CR+S+   G+ N +  ++LTDEMVIWFSSFH +GF
Subjt:  RRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

A0A5D3CJ45 E3 ubiquitin-protein ligase RNF131.49e-5767.32Show/hide
Query:  MVFNRVFFFFYN-FIGFRGRP-KLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSI-------EEGIE--TSVLPCLHEFHK
        MVFN+VFFFFYN FIGFR RP + KQ T LPHGG+S+LR M  D+  I   + LSS  KALEGE CC VCLSS+       ++G+   TSVLPCLHEFHK
Subjt:  MVFNRVFFFFYN-FIGFRGRP-KLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSI-------EEGIE--TSVLPCLHEFHK

Query:  VCVDRWFEERRRTCPICRYSMEGAGQGN--ENGTQILTDEMVIWFSSFHTSGF
        VCV+RWFEE RRTCPICRYSMEG G G+  +   QILTDEMVIWFSSFHTSGF
Subjt:  VCVDRWFEERRRTCPICRYSMEGAGQGN--ENGTQILTDEMVIWFSSFHTSGF

A0A6A1UIA7 Protein preY, mitochondrial4.01e-3448.51Show/hide
Query:  YNFIGFRGRPKLKQKTLLPHGGDSTLR----QMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPIC
        +  IG R +P LK+    P    S +       V+++  +    + SSSG+  EGE  CCVCLS +++G +T +LPCLHEFHKVCVDRWF   R+TCP+C
Subjt:  YNFIGFRGRPKLKQKTLLPHGGDSTLR----QMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPIC

Query:  RYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
        R+SM   G+ N    + LTDEMVIWFSSFH +GF
Subjt:  RYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

A0A6J1CW69 E3 ubiquitin-protein ligase SDIR1-like1.99e-101100Show/hide
Query:  MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERR
        MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERR
Subjt:  MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERR

Query:  RTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
        RTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF
Subjt:  RTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

SwissProt top hitse value%identityAlignment
Q0WPW5 Receptor homology region, transmembrane domain- and RING domain-containing protein 46.2e-0930.43Show/hide
Query:  FRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR
        F  R +++++ +L   G+   R       R+P  +      +A    + CC+CL + E+G +  +LPC H+FH  CVD W  +R+  CP+C+
Subjt:  FRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR

Q6ZNA4 E3 ubiquitin-protein ligase Arkadia1.4e-0842.86Show/hide
Query:  CVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSME
        C      G   + E  C +CLS +EEG +   LPC+H FH+VCVD+W    ++ CPICR  +E
Subjt:  CVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSME

Q8GUU2 E3 ubiquitin protein ligase RIE12.1e-0942.37Show/hide
Query:  LSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM
        L++    L  +  CC+CLSS E+G E   LPC H FH  C+ +W  + R TCP+C+Y++
Subjt:  LSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM

Q9H6Y7 E3 ubiquitin-protein ligase RNF1671.1e-0843.64Show/hide
Query:  CCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNEN
        C +CL   E+G +  VLPC H +H  CVD W  + R+TCPIC+  +   G G+E+
Subjt:  CCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNEN

Q9M2S6 E3 ubiquitin-protein ligase SDIR12.5e-1034.38Show/hide
Query:  PKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQ
        P  K K L P  G S  +Q     S      + + S K  E E+ C VCL  +  G     LPCLH+FH  C+D W  + + TCP+C++      Q
Subjt:  PKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQ

Arabidopsis top hitse value%identityAlignment
AT2G01735.1 RING-finger protein for embryogenesis1.5e-1042.37Show/hide
Query:  LSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM
        L++    L  +  CC+CLSS E+G E   LPC H FH  C+ +W  + R TCP+C+Y++
Subjt:  LSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM

AT3G51325.1 RING/U-box superfamily protein1.3e-1447.37Show/hide
Query:  EMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFE-ERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFH
        E CC VCL  +E       LPC HEFH +CVD WF   R+  CP+CR+S           T +LTDE+++WFSSFH
Subjt:  EMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFE-ERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFH

AT3G55530.1 RING/U-box superfamily protein1.8e-1134.38Show/hide
Query:  PKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQ
        P  K K L P  G S  +Q     S      + + S K  E E+ C VCL  +  G     LPCLH+FH  C+D W  + + TCP+C++      Q
Subjt:  PKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQ

AT4G09560.1 Protease-associated (PA) RING/U-box zinc finger family protein4.4e-1030.43Show/hide
Query:  FRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR
        F  R +++++ +L   G+   R       R+P  +      +A    + CC+CL + E+G +  +LPC H+FH  CVD W  +R+  CP+C+
Subjt:  FRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR

AT5G45290.1 RING/U-box superfamily protein9.8e-1053.49Show/hide
Query:  CCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR
        C +CL   EE      LPC HEFHK CVD+W +E  R CP+CR
Subjt:  CCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCAACAGGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAAAAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCG
GCAGATGGTGGAGGATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATAGAAG
AAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGTGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATG
GAAGGAGCAGGGCAGGGTAATGAAAATGGGACTCAGATTCTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTC
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCAACAGGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAAAAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCG
GCAGATGGTGGAGGATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATAGAAG
AAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGTGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATG
GAAGGAGCAGGGCAGGGTAATGAAAATGGGACTCAGATTCTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTC
Protein sequenceShow/hide protein sequence
MVFNRVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM
EGAGQGNENGTQILTDEMVIWFSSFHTSGF