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MC10g1429 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g1429
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionla-related protein 1B-like
Genome locationMC10:17627673..17628561
RNA-Seq ExpressionMC10g1429
SyntenyMC10g1429
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR006630 - La-type HTH domain
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9596564.1 putative winged helix-turn-helix DNA-binding domain-containing protein [Lupinus albus]9.98e-2141.51Show/hide
Query:  QIWYSHSNGYGWEFCTP-------IDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPS-----------PPIYHPFPTKELYWKIINQV
        Q W +H N  G E   P       I PPP S   + +P  PM  + SP   P         P PPPPP            PP++   P  +L+ K++NQ+
Subjt:  QIWYSHSNGYGWEFCTP-------IDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPS-----------PPIYHPFPTKELYWKIINQV

Query:  NYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        +YYFS+ENL  DTFL+++MD  GWVPI+LIA FN++  LT+ I+ IL A+  SSVVE+Q
Subjt:  NYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

KZV46120.1 la-related protein 1C [Dorcoceras hygrometricum]1.36e-2044.8Show/hide
Query:  PIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFN
        P+   PY   V  N  +P+ YY  P   P +          P  P  P+++P P   L  KI++Q++YYFSDENL  DTFL++ MDVDGWVPI LIA F 
Subjt:  PIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFN

Query:  RMRILTNDIEYILFALHGSSVVEVQ
        ++R LT++++ IL AL  S+VVE+Q
Subjt:  RMRILTNDIEYILFALHGSSVVEVQ

PSS21409.1 La-related protein like [Actinidia chinensis var. chinensis]1.60e-2045Show/hide
Query:  TPIDPPPYSGYVLSNPQ-NPMAY--YISPNFGPSNYMYNSCSPSPPPP----------PSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMD
        TP  PPP    V   P  NPM Y   ++P       MY     +PPPP          P PP+++P P   L  KI+NQ++YYFS+ENL  DTFL+++MD
Subjt:  TPIDPPPYSGYVLSNPQ-NPMAY--YISPNFGPSNYMYNSCSPSPPPP----------PSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMD

Query:  VDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQV
         DGWVPI+LIA F ++  LT +I+ IL A+  S VVEV+V
Subjt:  VDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQV

XP_022145446.1 la-related protein 1B-like [Momordica charantia]7.40e-111100Show/hide
Query:  FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLR
        FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLR
Subjt:  FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLR

Query:  HDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        HDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
Subjt:  HDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

XP_031739211.1 la-related protein 1C-like [Cucumis sativus]8.69e-3452.35Show/hide
Query:  EHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHP--FPTKELYWKIINQVNYYFSDENL
        E+Y+I N+IW S  +G  W +  P+  P  SG++      PM +YI+  +     MYN     P  PP P IY P  +  K+LYW+IINQVNYYFSDENL
Subjt:  EHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHP--FPTKELYWKIINQVNYYFSDENL

Query:  RHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEV
          DTFLK++MD  GWV I LIA+F R++ LTNDIE+ILFAL GSS VEV
Subjt:  RHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEV

TrEMBL top hitse value%identityAlignment
A0A2G9GW39 RNA-binding protein LARP/SRO91.06e-2056.79Show/hide
Query:  PSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        P PP Y+P P   L  KI+NQ++YYFSDENL  DTFL+++MD +GWVPI+LIA F ++  LT++I+ IL A+ GS+VVE+Q
Subjt:  PSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

A0A2R6R5X1 La-related protein like7.73e-2145Show/hide
Query:  TPIDPPPYSGYVLSNPQ-NPMAY--YISPNFGPSNYMYNSCSPSPPPP----------PSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMD
        TP  PPP    V   P  NPM Y   ++P       MY     +PPPP          P PP+++P P   L  KI+NQ++YYFS+ENL  DTFL+++MD
Subjt:  TPIDPPPYSGYVLSNPQ-NPMAY--YISPNFGPSNYMYNSCSPSPPPP----------PSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMD

Query:  VDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQV
         DGWVPI+LIA F ++  LT +I+ IL A+  S VVEV+V
Subjt:  VDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQV

A0A2Z7CGG8 La-related protein 1C6.59e-2144.8Show/hide
Query:  PIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFN
        P+   PY   V  N  +P+ YY  P   P +          P  P  P+++P P   L  KI++Q++YYFSDENL  DTFL++ MDVDGWVPI LIA F 
Subjt:  PIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFN

Query:  RMRILTNDIEYILFALHGSSVVEVQ
        ++R LT++++ IL AL  S+VVE+Q
Subjt:  RMRILTNDIEYILFALHGSSVVEVQ

A0A6A4P7P9 Putative winged helix-turn-helix DNA-binding domain-containing protein4.83e-2141.51Show/hide
Query:  QIWYSHSNGYGWEFCTP-------IDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPS-----------PPIYHPFPTKELYWKIINQV
        Q W +H N  G E   P       I PPP S   + +P  PM  + SP   P         P PPPPP            PP++   P  +L+ K++NQ+
Subjt:  QIWYSHSNGYGWEFCTP-------IDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPS-----------PPIYHPFPTKELYWKIINQV

Query:  NYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        +YYFS+ENL  DTFL+++MD  GWVPI+LIA FN++  LT+ I+ IL A+  SSVVE+Q
Subjt:  NYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

A0A6J1CWB8 la-related protein 1B-like3.58e-111100Show/hide
Query:  FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLR
        FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLR
Subjt:  FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLR

Query:  HDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        HDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
Subjt:  HDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

SwissProt top hitse value%identityAlignment
Q6PKG0 La-related protein 15.4e-1152.38Show/hide
Query:  IINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEV
        I  Q+ YYFS +NL  D FL++ MD DG++PI LIA+F+R++ LT DI  I  AL  S VVE+
Subjt:  IINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEV

Q6ZQ58 La-related protein 19.2e-1152.38Show/hide
Query:  IINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEV
        I  Q+ YYFS +NL  D FL++ MD DG++PI LIA+F+R++ LT DI  I  AL  S VVE+
Subjt:  IINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEV

Q8RWR2 La-related protein 1B5.8e-1333.53Show/hide
Query:  HYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMA----------YYISPNFGP-------SNYMYNSCSPSPPPPPSPPIYHPFPTKELYW-
        +Y   NQ  +SH N  G +    +   P  G  +  PQ  M           Y  +P  G         +Y  +   P P P P   +  PFP + +Y+ 
Subjt:  HYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMA----------YYISPNFGP-------SNYMYNSCSPSPPPPPSPPIYHPFPTKELYW-

Query:  --------KIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
                KI+ QV YYFS +NL  D  L+  M+ +GWVP+++IA F R+  LTN+I+ IL AL  S VVE+Q
Subjt:  --------KIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

Q940X9 La-related protein 1A2.0e-1340.17Show/hide
Query:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND
        P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV YYFSDENL +D +L   MD +GWVP ++IA F R++ +T D
Subjt:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND

Query:  IEYILFALHGSSVVEVQ
        +++I++AL  S+ VEVQ
Subjt:  IEYILFALHGSSVVEVQ

Q94K80 La-related protein 1C7.8e-1039.29Show/hide
Query:  PPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        P P  P  ++ +    L+ K+  Q+ YYFSDENL  D +L+  M+ +G+VP++++A F ++  LT++I+ I+ AL  S  VEVQ
Subjt:  PPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

Arabidopsis top hitse value%identityAlignment
AT4G35890.1 winged-helix DNA-binding transcription factor family protein5.6e-1139.29Show/hide
Query:  PPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
        P P  P  ++ +    L+ K+  Q+ YYFSDENL  D +L+  M+ +G+VP++++A F ++  LT++I+ I+ AL  S  VEVQ
Subjt:  PPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ

AT5G21160.1 LA RNA-binding protein1.4e-1440.17Show/hide
Query:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND
        P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV YYFSDENL +D +L   MD +GWVP ++IA F R++ +T D
Subjt:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND

Query:  IEYILFALHGSSVVEVQ
        +++I++AL  S+ VEVQ
Subjt:  IEYILFALHGSSVVEVQ

AT5G21160.2 LA RNA-binding protein1.4e-1440.17Show/hide
Query:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND
        P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV YYFSDENL +D +L   MD +GWVP ++IA F R++ +T D
Subjt:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND

Query:  IEYILFALHGSSVVEVQ
        +++I++AL  S+ VEVQ
Subjt:  IEYILFALHGSSVVEVQ

AT5G21160.3 LA RNA-binding protein1.4e-1440.17Show/hide
Query:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND
        P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV YYFSDENL +D +L   MD +GWVP ++IA F R++ +T D
Subjt:  PNF-GPSNYMYNSCSPSPPP----PPSPPIYHPFPTK-----------ELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND

Query:  IEYILFALHGSSVVEVQ
        +++I++AL  S+ VEVQ
Subjt:  IEYILFALHGSSVVEVQ

AT5G66100.1 winged-helix DNA-binding transcription factor family protein4.1e-1433.53Show/hide
Query:  HYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMA----------YYISPNFGP-------SNYMYNSCSPSPPPPPSPPIYHPFPTKELYW-
        +Y   NQ  +SH N  G +    +   P  G  +  PQ  M           Y  +P  G         +Y  +   P P P P   +  PFP + +Y+ 
Subjt:  HYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMA----------YYISPNFGP-------SNYMYNSCSPSPPPPPSPPIYHPFPTKELYW-

Query:  --------KIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ
                KI+ QV YYFS +NL  D  L+  M+ +GWVP+++IA F R+  LTN+I+ IL AL  S VVE+Q
Subjt:  --------KIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGAACACTATCATATTGACAACCAAATATGGTATTCTCATTCCAATGGCTATGGTTGGGAATTTTGCACCCCCATCGATCCTCCACCTTATTCAGGATACGTACTTTC
GAATCCTCAAAATCCCATGGCATATTATATTTCTCCAAATTTTGGACCATCTAACTACATGTATAATTCTTGTTCACCGTCGCCGCCACCACCGCCCTCGCCGCCGATAT
ATCATCCTTTTCCTACTAAAGAGCTATATTGGAAAATAATAAATCAAGTCAATTATTATTTCAGCGACGAAAATTTAAGGCATGATACATTCCTAAAGAAGCATATGGAT
GTTGATGGATGGGTTCCCATTCAGTTGATTGCTACTTTTAATAGAATGCGAATATTGACAAATGATATTGAATACATCTTGTTTGCATTACATGGCTCCAGTGTTGTTGA
AGTACAGGTA
mRNA sequenceShow/hide mRNA sequence
TTTGAACACTATCATATTGACAACCAAATATGGTATTCTCATTCCAATGGCTATGGTTGGGAATTTTGCACCCCCATCGATCCTCCACCTTATTCAGGATACGTACTTTC
GAATCCTCAAAATCCCATGGCATATTATATTTCTCCAAATTTTGGACCATCTAACTACATGTATAATTCTTGTTCACCGTCGCCGCCACCACCGCCCTCGCCGCCGATAT
ATCATCCTTTTCCTACTAAAGAGCTATATTGGAAAATAATAAATCAAGTCAATTATTATTTCAGCGACGAAAATTTAAGGCATGATACATTCCTAAAGAAGCATATGGAT
GTTGATGGATGGGTTCCCATTCAGTTGATTGCTACTTTTAATAGAATGCGAATATTGACAAATGATATTGAATACATCTTGTTTGCATTACATGGCTCCAGTGTTGTTGA
AGTACAGGTA
Protein sequenceShow/hide protein sequence
FEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMD
VDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQV