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MC10g_new0095 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC10g_new0095
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Genome locationMC10:3270779..3271288
RNA-Seq ExpressionMC10g_new0095
SyntenyMC10g_new0095
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036235.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo var. makuwa]3.68e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

XP_004143506.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]3.75e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

XP_008440701.1 PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo]3.75e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

XP_022132461.1 U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]5.83e-0552.08Show/hide
Query:  DQDHYDQYDEWRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        DQD YDQYD         +     H++ERS D+ +EYRR+ERSHSREY
Subjt:  DQDHYDQYDEWRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

XP_038881482.1 U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida]1.08e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

TrEMBL top hitse value%identityAlignment
A0A0A0KGZ1 RRM domain-containing protein1.81e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

A0A1S3B1S2 U1 small nuclear ribonucleoprotein 70 kDa1.81e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

A0A2N9GFI9 Uncharacterized protein1.39e-0436.89Show/hide
Query:  QIVVVGGMLVKLRSRIGIGTQILTKT-------EAGGNLISQKADRDQDHYDQY-----DEWRTI----IIMSKALLNPHNRERSLDVIYEYRRTERSHS
        Q ++VGGM       +GI  Q  TKT       E G ++I      D +HYDQY     D++  +        +A      RER+ DV +EYRR+ERS S
Subjt:  QIVVVGGMLVKLRSRIGIGTQILTKT-------EAGGNLISQKADRDQDHYDQY-----DEWRTI----IIMSKALLNPHNRERSLDVIYEYRRTERSHS

Query:  REY
        REY
Subjt:  REY

A0A5D3CMG9 U1 small nuclear ribonucleoprotein 70 kDa1.78e-0445.76Show/hide
Query:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        G     +  RDQD YDQYD+         +     H+RERS D+ +EY+R+ERSHSREY
Subjt:  GNLISQKADRDQDHYDQYDE-WRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

A0A6J1BSC4 U1 small nuclear ribonucleoprotein 70 kDa2.82e-0552.08Show/hide
Query:  DQDHYDQYDEWRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY
        DQD YDQYD         +     H++ERS D+ +EYRR+ERSHSREY
Subjt:  DQDHYDQYDEWRTIIIMSKALLNPHNRERSLDVIYEYRRTERSHSREY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTACCGCTTCGATCATCTCTTCCTTCTTCCTCATCCCCTCGACGGCAACCGATGTTTCTCCGTCCTCTGTCTACGGCCTCCGATTCAAATTGTGGTGGTCGGAGG
GATGTTAGTGAAACTGAGGTCGAGGATTGGGATAGGCACCCAGATCCTGACCAAGACCGAAGCCGGGGGCAATTTGATATCGCAGAAGGCCGATCGTGACCAAGATCATT
ATGATCAGTATGATGAATGGAGGACGATTATCATTATGAGCAAGGCACTTCTGAATCCACATAATAGAGAGAGGTCTCTTGATGTGATTTATGAATATAGGCGCACTGAA
AGATCTCATTCGAGAGAGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTACCGCTTCGATCATCTCTTCCTTCTTCCTCATCCCCTCGACGGCAACCGATGTTTCTCCGTCCTCTGTCTACGGCCTCCGATTCAAATTGTGGTGGTCGGAGG
GATGTTAGTGAAACTGAGGTCGAGGATTGGGATAGGCACCCAGATCCTGACCAAGACCGAAGCCGGGGGCAATTTGATATCGCAGAAGGCCGATCGTGACCAAGATCATT
ATGATCAGTATGATGAATGGAGGACGATTATCATTATGAGCAAGGCACTTCTGAATCCACATAATAGAGAGAGGTCTCTTGATGTGATTTATGAATATAGGCGCACTGAA
AGATCTCATTCGAGAGAGTATTAG
Protein sequenceShow/hide protein sequence
MFYRFDHLFLLPHPLDGNRCFSVLCLRPPIQIVVVGGMLVKLRSRIGIGTQILTKTEAGGNLISQKADRDQDHYDQYDEWRTIIIMSKALLNPHNRERSLDVIYEYRRTE
RSHSREY