; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g0017 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g0017
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationMC11:167750..169270
RNA-Seq ExpressionMC11g0017
SyntenyMC11g0017
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]1.97e-19599.64Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP
        LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP

XP_022936161.1 splicing factor U2af small subunit B-like [Cucurbita moschata]6.98e-18595.65Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  --LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
          LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  --LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_022941119.1 splicing factor U2af small subunit B-like [Cucurbita moschata]1.04e-18897.45Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_023521110.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]6.77e-18796.35Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_023525325.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]4.24e-18897.09Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DR+DRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

TrEMBL top hitse value%identityAlignment
A0A5A7VFL1 Splicing factor U2af small subunit B-like1.04e-18194.6Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRS--PV--REGSEERRARIEQWNREREEK
        LSPRNRK+YDRRERD+R+R++RGNGRSKER+DR   DGGRRRHGSPRRSRS  PV  REGSEERRARIEQWNREREEK
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRS--PV--REGSEERRARIEQWNREREEK

A0A6J1CN17 splicing factor U2af small subunit B-like9.52e-19699.64Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP
        LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP

A0A6J1F6R3 splicing factor U2af small subunit B-like3.38e-18595.65Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  --LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
          LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  --LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

A0A6J1FSM7 splicing factor U2af small subunit B-like5.04e-18997.45Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

A0A6J1IV82 splicing factor U2af small subunit B-like5.04e-18997.45Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit4.8e-6652.48Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN

Query:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR
        VCDNL DH++GNVYV+FR E+ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R   RSRSRSR
Subjt:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRR
            R+      R+R        G GR ++R    DR+   R
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRR

Q6AUG0 Splicing factor U2af small subunit B1.6e-11773.94Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREE+QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     RRS  RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNR-----KDYDRRERD--------------------FRDRD-FRGNG-----RSKERYDRYDRDGGRRRHGS-PRRSRSPVREGSEERRARIEQWN
         SPR+R     +D  RRERD                    +R  D +RG G         RYDRYD DGGRRRHGS PRR+RSPVRE SEERRA+IEQWN
Subjt:  LSPRNR-----KDYDRRERD--------------------FRDRD-FRGNG-----RSKERYDRYDRDGGRRRHGS-PRRSRSPVREGSEERRARIEQWN

Query:  REREEKP
        REREEKP
Subjt:  REREEKP

Q9FMY5 Splicing factor U2af small subunit B9.9e-12885.05Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE
        RS+SPR ++++ R RER D RDRD  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE

Q9S709 Splicing factor U2af small subunit A1.4e-12682.13Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK
        RSRS+SPRN++D DRR+   R+F    RDR+F  +G   RS ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Subjt:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK

Q9ZQW8 Splicing factor U2af small subunit A5.8e-11274.65Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDN ADHMIGNVYVQFREEDQAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     RRS S  RS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSP---RNRKDYDRRERD-FRDRD----------FRGNG-RSKERY-DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNRERE
         SP     R+DYDRR     RD D          +RG   RS ER+   YD DG RRRH S  R+RSPVR+GSEERRA+IEQWNRERE
Subjt:  LSP---RNRKDYDRRERD-FRDRD----------FRGNG-RSKERY-DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNRERE

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein2.4e-2832.24Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H +P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+ +  VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM

Query:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--
         GNVYV +R  + A  A Q++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D                    LFG  
Subjt:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--

Query:  --RYRGYRRSRSRSRS---LSPRNRKDYDRRER-------------DFRDRDFRGNGRSKERYDRYDRDGGRRRHG--SPRRSRSPVREGSEERRARIEQ
          ++  +  S S + S   LS  + +   RR R              +R R + G+ +   R D+  R       G  SP R  S  RE  +ERR   + 
Subjt:  --RYRGYRRSRSRSRS---LSPRNRKDYDRRER-------------DFRDRDFRGNGRSKERYDRYDRDGGRRRHG--SPRRSRSPVREGSEERRARIEQ

Query:  WNRE
         +R+
Subjt:  WNRE

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative1.0e-12782.13Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK
        RSRS+SPRN++D DRR+   R+F    RDR+F  +G   RS ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Subjt:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative1.3e-9578.84Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRSRSRS+SPRN++D DRR+   R+F    RDR+F  +G   RS ER +R +R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDR

Query:  DGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK
        DG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Subjt:  DGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein7.0e-12985.05Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE
        RS+SPR ++++ R RER D RDRD  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein7.0e-12985.05Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN PTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE
        RS+SPR ++++ R RER D RDRD  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCA
CAACCACCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAA
TTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGAC
TGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGAC
TTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAG
TGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCA
CAACCACCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAA
TTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGAC
TGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGAC
TTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAG
TGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCCGTGACGTTGGTATTTTTCTCTTTGGTAATTCTTCTGGCCTCTCCGTCATTTAATTA
TGTACCTTACACCAGAGTACTTTCTGCCCGAATAGGAAGTAGAAATCTTTTCTAGACAAAACGATGGATATCATATCAAGTAGCCTTTTGGTTATGTGCAATTTGTGTTT
CTAGTTGATGTTGTCGGATATGATTTCTCACTATTTCTATCTCCGGTTAATCATTCATATACTCTAACTTTTAACTTGCGCTCCTTCTGTTTATAACGAGGATTACTCCC
ATTTTACTTTTCATGAATTTCAGTTTCTCTTATTTGAATTTCTGACCCAGGCAGGAATAAACTAGGAAAGTCGTTCGTAAACTTGCTATTTAACCAAATTCTAATTATTA
TGTCAGTGGGCTAGAAAGAACTTGGGATGTTGTCCAACTTATGGGAATAAGTTACATTTGAGTACACTTGTGAATTGGTGAGATTATTGTTTGATAAATAGTAGTCAGGT
GCTTTTTGATTGAAAGTGTGAAAGAAATAAGGTTTATTGTGTGCTAGTCATTTCTCATGTATTTATTATGTATATATAAAAACTGTGTATGGCCTTCAGAGAGAATAATC
TTCGGGCCTACGAATTCCTTAGATGTTTCGCAGCTATCAGAAAAACTAAATGGCTGTAGATGACAACTATTCGGAATCTAGAGAAGTTGAA
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNHPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG
NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRD
FRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKP