; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g0238 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g0238
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
Genome locationMC11:1883237..1884984
RNA-Seq ExpressionMC11g0238
SyntenyMC11g0238
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0032991 - protein-containing complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55205.1 hypothetical protein Csa_012375 [Cucumis sativus]1.02e-10356.48Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+R+W LITVFDDGWQREAKHLYEHSFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L +IS      T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNNIL+V++Q LPKSQ    TSQGSLRKHR LL PA A FEN KDEDE T VII              LS   MD  ++ LQQQGSAATG+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST
        LERLK DYGKS +ML HWRKMYDNLHQFCVNELLD +QT NI+GNST
Subjt:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST

XP_008452567.1 PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo]3.29e-10255.91Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+R+W LITVFDDGWQREAKHLYEHSFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNNIL+V++Q LPKSQ    TSQGSLRKHR +L PA A FEN KDEDE T VII              LS   MD+ ++ LQQQGSAAT +E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST
        LERLK DYGKS +ML HWRKMYDNLHQFCVNELLD +QT NI+GNST
Subjt:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST

XP_011654116.2 protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]6.44e-10356.48Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+R+W LITVFDDGWQREAKHLYEHSFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L +IS      T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNNIL+V++Q LPKSQ    TSQGSLRKHR LL PA A FEN KDEDE T VII              LS   MD  ++ LQQQGSAATG+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST
        LERLK DYGKS +ML HWRKMYDNLHQFCVNELLD +QT NI+GNST
Subjt:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST

XP_022941447.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]9.43e-10155.46Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL+K WHAHYRAVTCLVFSEDDSLLISGSEDGCVR+W L+ VFDDGWQRE+KHLYEHSFT HNLP+TDIV+ G+GG SNAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNN+LIVR+QLLP SQ+N  TSQGSLRKHRSLL PA A F N KD+DEDT VIIG             +S   MD+ ++ LQQQGSAATG+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQT
        LERLKRDYGKSM+M   WRK+YDNLHQ+CVNELLD DQT
Subjt:  LERLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQT

XP_038898957.1 protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]7.83e-10657.23Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+R+W L+TVFDDGWQREAKHLYEHSFT HNLP+TDIVV G+GG SNAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNNIL+VR+Q+LPKSQ    TSQG LRKHRSLL PA A FEN KDEDEDT VIIG             LS   MD+ ++ LQQQGSAA G+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNS
        LERLK D GKSM+ML HWRKMYDNLHQFCVNELLD DQT NI GNS
Subjt:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNS

TrEMBL top hitse value%identityAlignment
A0A0A0KZT0 WD_REPEATS_REGION domain-containing protein4.93e-10456.48Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+R+W LITVFDDGWQREAKHLYEHSFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L +IS      T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNNIL+V++Q LPKSQ    TSQGSLRKHR LL PA A FEN KDEDE T VII              LS   MD  ++ LQQQGSAATG+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST
        LERLK DYGKS +ML HWRKMYDNLHQFCVNELLD +QT NI+GNST
Subjt:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST

A0A1S3BU36 protein ROOT INITIATION DEFECTIVE 31.59e-10255.91Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+R+W LITVFDDGWQREAKHLYEHSFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNNIL+V++Q LPKSQ    TSQGSLRKHR +L PA A FEN KDEDE T VII              LS   MD+ ++ LQQQGSAAT +E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST
        LERLK DYGKS +ML HWRKMYDNLHQFCVNELLD +QT NI+GNST
Subjt:  LERLKRDYGKSMKML-HWRKMYDNLHQFCVNELLDVDQTLNIDGNST

A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like1.26e-9853.87Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL KKWH HYRAVTC+VFSEDDSLLISGSEDGCVR+W L+TVFDDGWQREAKHLYEHSFT HNLPITDIVV G+GG SN+III SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIGLSEEFM-----------DSSVSLLQQQGSAATGVELE
                VNNI+IVR++++PK  IN  +SQGSLRKHRSL+ P  A FEN KDEDEDT ++IG+S EFM           ++ ++ LQ+QG AATG+ELE
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIGLSEEFM-----------DSSVSLLQQQGSAATGVELE

Query:  RLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQ
        R+KRDYG+SM+ML  WRKMYDNLH+FCVNEL+D DQ
Subjt:  RLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQ

A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 34.57e-10155.46Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL+K WHAHYRAVTCLVFSEDDSLLISGSEDGCVR+W L+ VFDDGWQRE+KHLYEHSFT HNLP+TDIV+ G+GG SNAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNN+LIVR+QLLP SQ+N  TSQGSLRKHRSLL PA A F N KD+DEDT VIIG             +S   MD+ ++ LQQQGSAATG+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQT
        LERLKRDYGKSM+M   WRK+YDNLHQ+CVNELLD DQT
Subjt:  LERLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQT

A0A6J1IYT8 protein ROOT INITIATION DEFECTIVE 32.37e-9854.57Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S
        +GRLL+K WHAHYRAVTCL FSEDDSLLISGSEDGCVR+W L+ VFDDGWQRE+KHLYEHSFT HNLP+TDIV+ G+GG SNAIII SSVD+TCKV   S
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-S

Query:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------
        KG L  + N +   + + I L     VF                  PS  DY +H L    ++ K  T   YC +G                        
Subjt:  KGFLCNINNFMMIWLCETIVL---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL-----------------------

Query:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE
                VNN+LIV+ QLLP SQ+N  TSQGSLRKHRSLL PA A F N KD+DEDT VIIG             +S   MD  ++ LQQQGSAATG+E
Subjt:  --------VNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE

Query:  LERLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQT
        LERLKR+YGKSM+M   WRK+YDNLHQ+CVNELLD DQT
Subjt:  LERLKRDYGKSMKMLH-WRKMYDNLHQFCVNELLDVDQT

SwissProt top hitse value%identityAlignment
A0A1L8HX76 WD repeat-containing protein 181.1e-0941.38Show/hide
Query:  HAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV
        ++HY+ VTCL F++D S +ISG++D  V +W L +V      R  +  Y   +++H+LPITD V  G  GG  A +  SS+DQT K+
Subjt:  HAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV

Q4PHV3 Pre-rRNA-processing protein IPI31.1e-0430.3Show/hide
Query:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAK-HLYEH------SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV
        L+  + AHYR+VT L ++ D + L++GSED  + +W L  +     Q  +     EH      +   HNL ITD+ +        A+++ SS D + K+
Subjt:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAK-HLYEH------SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV

Q6BMP5 Pre-rRNA-processing protein IPI31.0e-0734.34Show/hide
Query:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIW---PLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV
        +G LL  K  AHY+A+T + FS+  + L+SGS D    +W    LI+V++   +         SFT H+LPITD+ +   G  S+  +   S D T ++
Subjt:  AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIW---PLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV

Q9M3B4 Protein ROOT INITIATION DEFECTIVE 35.7e-3834.76Show/hide
Query:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFL
        L+KKWH HYR+VTCLVFS DDSLL+SGS+DG +R+W LI +FDD  +++   LYEH+F +H + +TDIV+    GG NA+II SS D+TCKV   S+G L
Subjt:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFL

Query:  CNINNFMMIWLCETIVLRR---VFLPSPFD--------------------------------YYVHDLNISLSECK----CTGDPYCC------------
          + N +   +   + L     VF     D                                 Y  D N+ +S  +    C  DP               
Subjt:  CNINNFMMIWLCETIVLRR---VFLPSPFD--------------------------------YYVHDLNISLSECK----CTGDPYCC------------

Query:  -AGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVELERL
          G VNNI IVR+ ++  S      +Q S +   +L+ P    +E   ++  D  V +              LS + +D  V  LQQQGSAAT +E+ERL
Subjt:  -AGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVELERL

Query:  KRDYGKSMKM-LHWRKMYDNLHQFCVNE
        K +Y +S++M   W+K Y+NL Q  + E
Subjt:  KRDYGKSMKM-LHWRKMYDNLHQFCVNE

Arabidopsis top hitse value%identityAlignment
AT2G47410.1 WD40/YVTN repeat-like-containing domain;Bromodomain4.2e-0430.77Show/hide
Query:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV
        IKK   H  AV C +F      +I+GS+D  V+IW + T            L   S   H   ITD+ V      +NA++  +S D   +V
Subjt:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV

AT2G47410.2 WD40/YVTN repeat-like-containing domain;Bromodomain4.2e-0430.77Show/hide
Query:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV
        IKK   H  AV C +F      +I+GS+D  V+IW + T            L   S   H   ITD+ V      +NA++  +S D   +V
Subjt:  IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV

AT3G49180.1 Transducin/WD40 repeat-like superfamily protein4.0e-3934.76Show/hide
Query:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFL
        L+KKWH HYR+VTCLVFS DDSLL+SGS+DG +R+W LI +FDD  +++   LYEH+F +H + +TDIV+    GG NA+II SS D+TCKV   S+G L
Subjt:  LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFL

Query:  CNINNFMMIWLCETIVLRR---VFLPSPFD--------------------------------YYVHDLNISLSECK----CTGDPYCC------------
          + N +   +   + L     VF     D                                 Y  D N+ +S  +    C  DP               
Subjt:  CNINNFMMIWLCETIVLRR---VFLPSPFD--------------------------------YYVHDLNISLSECK----CTGDPYCC------------

Query:  -AGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVELERL
          G VNNI IVR+ ++  S      +Q S +   +L+ P    +E   ++  D  V +              LS + +D  V  LQQQGSAAT +E+ERL
Subjt:  -AGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVELERL

Query:  KRDYGKSMKM-LHWRKMYDNLHQFCVNE
        K +Y +S++M   W+K Y+NL Q  + E
Subjt:  KRDYGKSMKM-LHWRKMYDNLHQFCVNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGT
TAGAATTTGGCCTCTTATAACGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTG
TTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTTTTCCTCCGTGGATCAGACTTGTAAGGTTTGTCACTCTAAAGGATTTCTATGTAATATAAATAATTTTATG
ATGATTTGGCTGTGTGAAACCATAGTTTTGAGGAGGGTGTTCCTACCATCTCCTTTTGATTACTATGTCCATGACTTGAATATTTCATTATCTGAATGCAAATGCACCGG
TGATCCATACTGTTGTGCAGGCCTTGTAAATAATATACTTATCGTTAGAGAACAGCTTCTCCCTAAATCGCAGATAAATTATTATACATCTCAAGGATCCTTGAGAAAGC
ATCGCTCACTATTATCTCCCGCCTTTGCAAATTTTGAAAATTTGAAGGACGAGGATGAAGACACCAGCGTTATCATTGGTCTATCAGAAGAATTTATGGATTCTTCCGTT
TCGCTACTTCAGCAACAGGGTTCTGCTGCCACAGGAGTGGAGTTGGAAAGACTAAAGCGCGATTATGGAAAATCCATGAAAATGCTACACTGGAGAAAAATGTACGACAA
TTTACATCAATTTTGTGTAAACGAGCTTCTGGATGTCGATCAAACGTTAAATATTGATGGCAATTCCACG
mRNA sequenceShow/hide mRNA sequence
GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGT
TAGAATTTGGCCTCTTATAACGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTG
TTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTTTTCCTCCGTGGATCAGACTTGTAAGGTTTGTCACTCTAAAGGATTTCTATGTAATATAAATAATTTTATG
ATGATTTGGCTGTGTGAAACCATAGTTTTGAGGAGGGTGTTCCTACCATCTCCTTTTGATTACTATGTCCATGACTTGAATATTTCATTATCTGAATGCAAATGCACCGG
TGATCCATACTGTTGTGCAGGCCTTGTAAATAATATACTTATCGTTAGAGAACAGCTTCTCCCTAAATCGCAGATAAATTATTATACATCTCAAGGATCCTTGAGAAAGC
ATCGCTCACTATTATCTCCCGCCTTTGCAAATTTTGAAAATTTGAAGGACGAGGATGAAGACACCAGCGTTATCATTGGTCTATCAGAAGAATTTATGGATTCTTCCGTT
TCGCTACTTCAGCAACAGGGTTCTGCTGCCACAGGAGTGGAGTTGGAAAGACTAAAGCGCGATTATGGAAAATCCATGAAAATGCTACACTGGAGAAAAATGTACGACAA
TTTACATCAATTTTGTGTAAACGAGCTTCTGGATGTCGATCAAACGTTAAATATTGATGGCAATTCCACG
Protein sequenceShow/hide protein sequence
AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCHSKGFLCNINNFM
MIWLCETIVLRRVFLPSPFDYYVHDLNISLSECKCTGDPYCCAGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIGLSEEFMDSSV
SLLQQQGSAATGVELERLKRDYGKSMKMLHWRKMYDNLHQFCVNELLDVDQTLNIDGNST