CuGenDBv2

Gene ID	MC11g0259
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box protein GID2
Genome location	MC11:2068085..2068615
RNA-Seq Expression	MC11g0259
Synteny	MC11g0259
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

2.00e-97

77.84

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
        MKRV+ DG GD    RK GKK +AET +      +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ

Query:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +           SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_011654137.1 F-box protein GID2 [Cucumis sativus]

1.41e-97

78.35

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
        MKRV+ DG GD    RK GKK +AET +       +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ

Query:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS----------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        QLRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +SSSS          WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS----------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022151668.1 F-box protein GID2 [Momordica charantia]

5.41e-124

100

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022937325.1 F-box protein GID2-like [Cucurbita moschata]

1.49e-96

82.32

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRV+ +G GD    RK+ KK RA + +    G   K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSS+++ SS ASSSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

3.32e-99

81.62

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG----KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKRV+ DGDGD    RK+GKK RAET + +  G    ++GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG----KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        SVVLALGGFRRLHSLFIWPLTKPQSS+++ S     S +SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSAAAPS-----SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

6.83e-98

78.35

Show/hide

Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
        MKRV+ DG GD    RK GKK +AET +       +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ

Query:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS----------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        QLRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +SSSS          WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  QLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS----------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A1S3BV18 F-box protein GID2-like

9.69e-98

77.84

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
        MKRV+ DG GD    RK GKK +AET +      +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ

Query:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +           SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A5A7VFE5 F-box protein GID2-like

9.69e-98

77.84

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
        MKRV+ DG GD    RK GKK +AET +      +  S K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQ

Query:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        LRSVVLALGGFRRLHSLFIWPLTKPQSS+++ SS +           SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  LRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1DCV3 F-box protein GID2

2.62e-124

100

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1FA22 F-box protein GID2-like

7.22e-97

82.32

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRV+ +G GD    RK+ KK RA + +    G   K+GF+NLDDNLLFEV KHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSS+++ SS ASSSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.4e-26

41.49

Show/hide

Query:  GDGDGDGDGDRK------SGKKSRAETA----------------EDSASGKSGFV-NLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICT
        GDG G GD   K      S   S+ E +                ED+  G+   V +L ++L+FEVL+  +ARTLA AACVS+ W + AEDERLWE  C 
Subjt:  GDGDGDGDGDRK------SGKKSRAETA----------------EDSASGKSGFV-NLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICT

Query:  RHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
        R WAN G   +QLR+VVL+LGGFRRLH+++I PL      A  P                  +PP R G+D+V LSLSL SI +++ M
Subjt:  RHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

2.2e-11

30.83

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Query:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP
        +N   ++L E+L+ +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP

Query:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
           ++   P   W +D++ LSLSL  + YYE++
Subjt:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

3.8e-48

57.14

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKR   D D  GD   ++ KK ++   E+      GF NLD+NL++EVLKHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        ALGGFRRLHSL++WPL+KP                          P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

2.7e-49

57.14

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Query:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKR   D D  GD   ++ KK ++   E+      GF NLD+NL++EVLKHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVL
Subjt:  MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        ALGGFRRLHSL++WPL+KP                          P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  ALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

1.6e-12

30.83

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Query:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP
        +N   ++L E+L+ +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSP

Query:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
           ++   P   W +D++ LSLSL  + YYE++
Subjt:  FPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

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ATGAAGCGAGTTCTTGGCGATGGTGATGGTGATGGTGATGGGGATCGGAAGAGTGGGAAGAAATCGAGGGCGGAGACGGCGGAAGATTCCGCTTCCGGGAAGTCTGGGTT
TGTGAATTTGGATGATAATTTACTGTTCGAGGTGTTGAAGCATGTGGATGCGAGGACTCTGGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAAACGGCGGAGGACG
AGCGGCTCTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAGCAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGTCTCCACTCC
CTCTTCATCTGGCCTCTTACAAAACCCCAATCGTCGGCCGCCGCCCCTTCATCCCCGGCCTCCTCTTCCTCTTGGTCTCCGTTTCCGGCGATGATTGGGTCGAAGCCGCC
GGCCCGCTGGGGAAAGGACGAGGTCCATCTCTCGCTCTCCCTCCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHS
LFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

MC11g0259 (gene) of Bitter gourd (Dali-11) v1 genome