CuGenDBv2

Gene ID	MC11g0477
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	MC11:3692304..3695334
RNA-Seq Expression	MC11g0477
Synteny	MC11g0477
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

1.02e-139

93.14

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Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

1.69e-138

92.16

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Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

2.15e-150

100

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Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

5.64e-137

92.16

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Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+KRKF  +V+K  IVSMNSRFRASAEVPDFLPADW++AHKKNPLGPSLHFTAEEAIQ QLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

1.82e-137

92.65

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Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLIT RKF  +V+KP IVSM SRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

4.92e-140

93.14

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Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

8.16e-139

92.16

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

8.16e-139

92.16

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP  VSMNSRFR SAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

1.04e-150

100

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

2.73e-137

92.16

Show/hide

Query:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+KRKF  +V+K  IVSMNSRFRASAEVPDFLPADW++AHKKNPLGPSLHFTAEEAIQ QLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

7.2e-78

76.97

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Query:  ASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKE
        +S++VPDFL ADW E+ +K P GP L F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+
Subjt:  ASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKE

Query:  RKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        RK+LS LFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  RKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCATCCCTATCAGCTGCTCCTACCTCCATGTCTTTGATTACCAAGCGCAAATTCCCGATTGCTGTTGACAAACCTGCGATCGTTTCCATGAATTCTCG
ATTTAGAGCTTCCGCTGAAGTTCCTGATTTTCTCCCCGCAGATTGGAATGAAGCACACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTTACTGCAGAGGAAGCTATTC
AACACCAGCTTGATGCACTGAGATACAACGATCAACCCCATCAAGATTATGGAATCGAGGTCATGTACCAGTTTGCTGGATTCGATCCTCTTCGAAGGTCTACATATTTC
GGTCCCTTCTTTGATTTGGGACAGTTTGAGAGATTCAGACGAGTGTTCCATCATTCGACCTATCGTGTATTGCTAGGCCATAAAGAGAGGAAGATCTTGAGCTGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGAGTATGGATACGGGGCTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGTGGCTCATGGGATG
GGTATTGGCTTACAGAGAGCTTACTTAATGATGGGGATGCATTTAGTGGAGGCTTAGCGTACTGA

mRNA sequence

Show/hide mRNA sequence

GGCTAAAGTCTAAAATGGTAAGTTGGCCAAATAAATAAAATCTACGCCTCACCTCCAAAACGCCAAAAAACATCGACCATCGATTTCGAGGAGGAGGAGGAGGAGAAGAA
AAAAAAAAGGAGGGAAGGGAAATAGTTTTCTCCAGCGGAATAGGATGTCATGTTGTTCATCCCTATCAGCTGCTCCTACCTCCATGTCTTTGATTACCAAGCGCAAATTC
CCGATTGCTGTTGACAAACCTGCGATCGTTTCCATGAATTCTCGATTTAGAGCTTCCGCTGAAGTTCCTGATTTTCTCCCCGCAGATTGGAATGAAGCACACAAGAAGAA
TCCTCTAGGTCCAAGTTTACATTTTACTGCAGAGGAAGCTATTCAACACCAGCTTGATGCACTGAGATACAACGATCAACCCCATCAAGATTATGGAATCGAGGTCATGT
ACCAGTTTGCTGGATTCGATCCTCTTCGAAGGTCTACATATTTCGGTCCCTTCTTTGATTTGGGACAGTTTGAGAGATTCAGACGAGTGTTCCATCATTCGACCTATCGT
GTATTGCTAGGCCATAAAGAGAGGAAGATCTTGAGCTGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCGAGTATGGATACGGGGCTGTCGCCCCAAGGAAGAAGAAAT
ATTTCAATTCACCATGGTTCAGAGGGTTGGTGGCTCATGGGATGGGTATTGGCTTACAGAGAGCTTACTTAATGATGGGGATGCATTTAGTGGAGGCTTAGCGTACTGAG
AATGCTCTCCTCAAATTGGGTGCCTGGTTAGCAAACTTAGCATGATATTGTTCAATTTGTATATTTGAAATGTATATCATACGCCTGTAAGATCACATAACTTAGAATTT
GTATATAATATTAACATAGTTACATTCTATCATTTGAGAATCCCCTTTGAGTCGGTTTGGGTTGGTCAGATTCTTCGAGTGATCGAGTTCTTTGAACACTCCAATAGACC
ATATCAATAATAGTATGATATATCTATCGAAACAAACAAAGTGTGTTACCCTCTA

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPTSMSLITKRKFPIAVDKPAIVSMNSRFRASAEVPDFLPADWNEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDQPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSCLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

MC11g0477 (gene) of Bitter gourd (Dali-11) v1 genome