; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g0607 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g0607
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationMC11:4788329..4791351
RNA-Seq ExpressionMC11g0607
SyntenyMC11g0607
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal
IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI19296.3 unnamed protein product, partial [Vitis vinifera]1.53e-6781.02Show/hide
Query:  NPVRIKKPGA-SQTHHQSVASIPSLSCFRSRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFC
        N  R ++PG  S+       S+PS S    RMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFC
Subjt:  NPVRIKKPGA-SQTHHQSVASIPSLSCFRSRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFC

Query:  DNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ
        DNVWTFILQDA FKNE+SQENVGR+KIVACDSKLL+Q
Subjt:  DNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ

XP_004287436.1 PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. vesca]9.68e-6897.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFILQDA FKNEDSQENVGR+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]2.89e-69100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]6.81e-6898.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]1.95e-6797.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

TrEMBL top hitse value%identityAlignment
A0A1S2XSF2 Transcription initiation factor IIA subunit 24.68e-6897.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFILQDA FKNEDSQENVGR+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1BWA2 Transcription initiation factor IIA subunit 21.40e-69100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1F935 Transcription initiation factor IIA subunit 23.30e-6898.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1ILT9 Transcription initiation factor IIA subunit 23.30e-6898.11Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 29.45e-6897.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 21.9e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 21.0e-2551.52Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL TYRFCD VWTFI+++ +F+ ++      +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 21.9e-4888.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 25.9e-5091.51Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q90YG6 Transcription initiation factor IIA subunit 25.0e-2550.51Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK
        ++LYR +T+G  L E+LDE++Q   ++P+LA+QVL+QFDK++  AL ++V+++V+ KG L+TYRFCDNVWTF+L D  F+       V ++KIVACD K
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSK

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)4.2e-5191.51Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)4.2e-5191.51Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCTAACGTTAACCCAGTTAGAATCAAGAAACCAGGAGCATCACAAACTCACCACCAATCTGTAGCTTCAATTCCTTCCTT
ATCTTGTTTTCGAAGCAGAATGGCGACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAATGGTACTCTTAGTC
CTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGA
TTCTGCGACAACGTTTGGACCTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGAATGTTGGGAGAATTAAAATAGTAGCATGTGACTCGAAGTTACT
CTCACAATGA
mRNA sequenceShow/hide mRNA sequence
CAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCTAACGTTAACCCAGTTAGAATCAAGAAACCAGGAGCATCACAAACTCACCACCAATCTGTAGCTTCAATTCCTTCCTT
ATCTTGTTTTCGAAGCAGAATGGCGACGTTTGAACTGTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAATGGTACTCTTAGTC
CTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGA
TTCTGCGACAACGTTTGGACCTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGAATGTTGGGAGAATTAAAATAGTAGCATGTGACTCGAAGTTACT
CTCACAATGATGAGCTTTCAGACAAAATTTGCATAATTATTTGCTGATGGACAAGGGGAATTGTTGCGAGGAAGAAATAGCAATCCATGTCATTGTTTGAAAGTCGCAAA
GATTCAAACGTGATTCTGTAAAGTCATCGATCTGAACAGCAGAAAGTTAGTTTCTCGCACATTGACGTTACATTTGACTGTAAATTGGCTTCTGAGGCTGATTCCATGAC
AATTATACGAACCTTTTAGTTTAATGATAATAAAACATGATGTATCTGTTCTAATATTATCACTTTCTAGTCTTAATTTGTACTACTATCTCTACCCTTTTCTCCATGAG
GATTCAAGTTTCTACTTCTAATCGATATCATGAACAAGATTATACCTATTTTCAAGTAGTTGTGATCTCCTTTTCGCTTAATTTGGGAGACAATTACATTCTCCAAAAAC
GTCTTAAATCATTCATGTACATACCAAAAAACATGTCTTTTCAGTATACATCCTTTAAGTACCAGTAACCAAGTTCTTTTCATAAAACAGTTCTACATGAACATAATTTC
AGCCAACAATTTGTCATCCAGAACCCTGAGGAATCATGTCAAGCTGTCAACATCTTGATGGAAAGTCAACAATTTCAAGAACAAAATACATTGAAAAAAAAGTTGGATAA
AATATCTGGGATACTTGATTTGTCGCTTGTCACTAATAACCTTTGTTCCCGGAAAATAGTATACAACAAAAGAAAAAGGCAAAGATTATGAGAGAACGATGACTTTACAT
GTAGACCTGTCAGAACTGTTCCTGGACATTTGTTCAGTTTGATATCACACTGATCCTGATCGTACCAACCAACATGGACTTCTAATCCTTAATGAATCTTTAAGAATGAA
GATGACACAATATAGTAATTTAATATTAACTTTAATTAGCAAGTAAAGAACCCTTTGATAATATAAATTTTACCCAAAAATAAGATTTTCATGTCGACACACACTTGTCC
CGAAGCATTCCCATTTTCCTGATGCTCATCTGGACTTCAATGCCTGCCCTGCAGAAGGCCAAAAAAAATGTTTACTTACCTGTTCTAAATAGTTTAGATGACGACCTCTC
CATTTAATCTTAATACCGACAAAGAATAAAGTTGAGAATGCACATTAAAATTGAAGAACTCGGTATCTAGTTAGTGTTGCAAAAGGAAAATATGTGTCAGAAACTGCAAA
AGTTTCTTCACTGGATGGAACAATTATGAGAAAGAGCTCCGAACTAGAACTAACTTCTACCATGCATTCTCAGAAACAAAAGGAAAAAGAAAAGCAATAAATGAGTTCTC
AATCAGATATCAAAGTCTCCTGTGACAGACCTTGCGCTTCTTATGTTTTCTCATTCCGCTGCTACTTCTACCAAAACCTGTCGGTAGCTCACGATCAGCACCTTCCATGG
GCAAGGTTTTTATTTCGTCATAGAAGCTGTCAGTTA
Protein sequenceShow/hide protein sequence
QISSLAKSFGANVNPVRIKKPGASQTHHQSVASIPSLSCFRSRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYR
FCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ