; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g0629 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g0629
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description50S ribosomal protein 6, chloroplastic
Genome locationMC11:5058016..5058318
RNA-Seq ExpressionMC11g0629
SyntenyMC11g0629
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024601.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.48e-5178.5Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA------
        MSISTFFG RISVPPL + SASK  PC GGNLVIECSSRP+KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLPPDWT+VSS+S D  VE AA      
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA------

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_008466097.1 PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo]8.29e-5279.25Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ
        MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWDIRR+PTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]4.11e-5280.19Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ
        MSISTF GC+ISVPPL + SASK  PC  GNL+IECSSRP KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLPPDWTLVSSVSGD NVE A     AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

XP_022136057.1 50S ribosomal protein 6, chloroplastic [Momordica charantia]1.17e-68100Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
        MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS

Query:  E
        E
Subjt:  E

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]4.95e-5178.5Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A
        MSISTFFG RISVPPL + SASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLPPDWT+VSS+S D  VE A      A
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein1.99e-5280.19Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ
        MSISTF GC+ISVPPL + SASK  PC  GNL+IECSSRP KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLPPDWTLVSSVSGD NVE A     AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA-----AQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic4.01e-5279.25Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ
        MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWDIRR+PTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

A0A5A7TB88 50S ribosomal protein 64.01e-5279.25Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ
        MSISTF GC+ISVPPL + SASK  PC GGNL IECSSRP KKATAHHMKTRP+K+QPWDIRR+PTVYPPLPPLPPDWTLVSSVSGD NVE     ++AQ
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVE-----AAAQ

Query:  APPTSE
        AP TSE
Subjt:  APPTSE

A0A6J1C4H7 50S ribosomal protein 6, chloroplastic5.68e-69100Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
        MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTS

Query:  E
        E
Subjt:  E

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like1.39e-5077.57Show/hide
Query:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A
        MSIST+FG RISVPPL + SASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLPPDWT VSS+S D  VE A      A
Subjt:  MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAA------A

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic3.1e-1850.49Show/hide
Query:  SISTFFGCRISVPPLPDL-----SASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQA
        S+S+ FGC +S+ P   L        +   C  G L+IECSSRP KK+TAHHMKTRPRK++  D  R+PTVY PLPPLPPD+T+V  +  DA+       
Subjt:  SISTFFGCRISVPPLPDL-----SASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQA

Query:  PPT
        PPT
Subjt:  PPT

P82411 50S ribosomal protein 6, chloroplastic5.1e-2154Show/hide
Query:  MSISTFFGCRISVPPLPDLSAS------KLPP-----CPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDAN
        MS+S  FG R+   P    ++S      KL P     C GG + IECSSRP KK TAHHMKTRP+KT  WDI+R P VYPPLPPLP +WT+VSS   +A+
Subjt:  MSISTFFGCRISVPPLPDLSAS------KLPP-----CPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDAN

Q9FKP0 50S ribosomal protein 6, chloroplastic5.6e-2053.06Show/hide
Query:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA
        MS+S  FG  I    + P L      KL    G  +VIECSSRP KK+TAHH KTRP+KTQPWDI+R+PTVY PLPPLP +W+  +  S D     AA
Subjt:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 64.0e-2153.06Show/hide
Query:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA
        MS+S  FG  I    + P L      KL    G  +VIECSSRP KK+TAHH KTRP+KTQPWDI+R+PTVY PLPPLP +W+  +  S D     AA
Subjt:  MSISTFFGCRI----SVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTC
GTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACATCCGGCGCCAGCCAACTGTGTATCCTCCTCTGCCGCCTC
TCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCCACTTTTTTCGGCTGCAGGATTTCGGTTCCGCCATTGCCGGATTTATCTGCAAGCAAGCTACCTCCGTGCCCCGGCGGCAATTTGGTGATTGAATGCTC
GTCAAGGCCGACCAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAAACTCAGCCGTGGGACATCCGGCGCCAGCCAACTGTGTATCCTCCTCTGCCGCCTC
TCCCTCCGGACTGGACCTTGGTTTCTTCAGTCTCCGGCGACGCCAATGTCGAGGCAGCCGCACAAGCACCGCCTACTAGCGAG
Protein sequenceShow/hide protein sequence
MSISTFFGCRISVPPLPDLSASKLPPCPGGNLVIECSSRPTKKATAHHMKTRPRKTQPWDIRRQPTVYPPLPPLPPDWTLVSSVSGDANVEAAAQAPPTSE