; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g0846 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g0846
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNA exonuclease 4
Genome locationMC11:7211894..7214600
RNA-Seq ExpressionMC11g0846
SyntenyMC11g0846
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]6.02e-14883.52Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWALLQQKL  H S H   + V K + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGK++VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFL VEIQNGEHCPV+DARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]6.09e-15384.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWA+LQQKLK H S H + S VPK + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGV+IQNGEHCPV+DARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_022139347.1 RNA exonuclease 4 [Momordica charantia]1.49e-18599.25Show/hide
Query:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
        MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
Subjt:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG

Query:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
        RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
Subjt:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR

Query:  HLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        HLAAEFLGVEIQNGEHCP++DARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
Subjt:  HLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_038897121.1 RNA exonuclease 4 isoform X2 [Benincasa hispida]7.94e-14682.46Show/hide
Query:  QLKNSPKPKQMNPNWALLQQ-------KLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRS
        QLK + KPK +NPNWALLQQ       KLK   S H R S VPK + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TDVVAMDCEMVGVGQGN+S
Subjt:  QLKNSPKPKQMNPNWALLQQ-------KLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRS

Query:  ALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRR
        ALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQK+VA+LIKGKI+VGHAL ND KALLLSHPK+D+RDTSEYQFFQKEGCRR
Subjt:  ALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRR

Query:  ALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        ALRHLAAEFLGVEIQNGEHCPV+DARSAMLLYQKKRKEWEKS+K E+KLKLKQKKRK RKKSKDGGGF
Subjt:  ALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]1.12e-14884.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK + KPK +NPNWALLQQKLK   S H R S VPK + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TDVVAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQK+VA+LIKGKI+VGHAL ND KALLLSHPK+D+RDTSEYQFFQKEGCRRALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGVEIQNGEHCPV+DARSAMLLYQKKRKEWEKS+K E+KLKLKQKKRK RKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 42.92e-14883.52Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWALLQQKL  H S H   + V K + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGK++VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFL VEIQNGEHCPV+DARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A1S3CJW0 RNA exonuclease 42.95e-15384.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWA+LQQKLK H S H + S VPK + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGV+IQNGEHCPV+DARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A6J1CDP9 RNA exonuclease 47.19e-18699.25Show/hide
Query:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
        MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
Subjt:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG

Query:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
        RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
Subjt:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR

Query:  HLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        HLAAEFLGVEIQNGEHCP++DARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
Subjt:  HLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A6J1FBB2 RNA exonuclease 46.54e-14582.69Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK S KPK +NPNWALLQQKL  H SK  R S+VPK + S+ ++LGKRK+RSD +S  S+K LLIPVNDDFS+TDVVAMDCEMVGVGQGN+SALGRVT+
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQK+VA+LIKG+I+VGHAL ND KALLLSHPKKD+RDTSEYQFFQ+ GCRRALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGG
        E LGVEIQNGEHCPV+DARSAMLLYQKK KEWEKS+K+E+KLKLKQKKRKPRKKSKDGGG
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGG

E5GBF8 RNA exonuclease 42.95e-15384.67Show/hide
Query:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL
        QLK +PKPK +NPNWA+LQQKLK H S H + S VPK + S+ ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTL
Subjt:  QLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSN-SVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTL

Query:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA
        VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAA
Subjt:  VNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAA

Query:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        EFLGV+IQNGEHCPV+DARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  EFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 41.7e-3950Show/hide
Query:  NDDFSVTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKA
        N    +   +AMDCE VGVG +G  SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K A  F   QKK AD+++G+I+VGHAL +D +A
Subjt:  NDDFSVTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKA

Query:  LLLSHPKKDLRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEK
        L+LSHPK  LRDTS +  F+K   +G   +L+ L  E L + IQ GEH  V+DAR+ MLLY+K++ E+EK
Subjt:  LLLSHPKKDLRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 44.4e-4046.99Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  VAMDCEMVGVG  G  S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D+K  + F  VQ +VA++++G+ +VGHA+ ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++K++       K + P+K
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRK

Q6PAQ4 RNA exonuclease 45.2e-4147.27Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  +A+DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++F  V+K+VA+++KG+I+VGHAL ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKS
        PKK +RDT +++ F+   +  R +L+ L+ + LG+ +Q  EHC ++DA++AM LY   ++EWE S
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 46.8e-4146.49Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  VAMDCEMVGVG  G  S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D+KK + F  VQK+V+++++G+ +VGHA+ ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMK--LKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++K++    + + +K + P+K
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 45.2e-4147.67Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH
        +T  +A+DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++   VQK+VA+++KG+I+VGHAL ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSH

Query:  PKKDLRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKL
        PKK +RDT +Y+ F  Q +  R +LR L+ + LG+++Q  EHC ++DA++AM LY   +KEWE   +    L
Subjt:  PKKDLRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKL

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein8.3e-1834.76Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH L +D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   +D  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKE

AT2G48100.2 Exonuclease family protein8.3e-1834.76Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH L +D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   +D  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKE

AT2G48100.3 Exonuclease family protein8.3e-1834.76Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH L +D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALCNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   +D  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-9166.03Show/hide
Query:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG
        ++ +P+ K +PKP Q+NPNW+LLQQKLKS +  + R S+ P  +  +S+LGKRKER D +      N L PVNDD S+TD VAMDCEMVGV QG +SALG
Subjt:  MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALG

Query:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR
        RVTLVNKWGNV+YDEFVRP+E VVDFRT ISGIRP DL+KAKDF   Q KVA+LIKGKI+VGHAL ND KALLL+HPKKD+RDT EYQ F K   R++L+
Subjt:  RVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALR

Query:  HLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDG
        HLA+E LG +IQNGEHCP+ DAR+AM+LYQK RKEWEK++K + ++ LKQKKRKP+KK+K G
Subjt:  HLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein6.3e-1831.03Show/hide
Query:  VVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLI--------------KGKIVVGHAL
        VVA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ A     VQ+K+ + +              K +I+VGH L
Subjt:  VVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLI--------------KGKIVVGHAL

Query:  CNDFKALLLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEK
         +D   L L +P   +RDT++Y    K      +L++L   +LG ++  G   P +D  + M LY + R +  K
Subjt:  CNDFKALLLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPVKDARSAMLLYQKKRKEWEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTCAGCCTCAGCTCAAGAACAGCCCTAAACCGAAGCAGATGAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAAAGCCATGCTTCGAAGCATCCCAGGTT
CTCTAATGTTCCAAAATTCGATACTTCTAACTCTGTTTTGGGTAAACGCAAGGAAAGATCTGATGTGGACTCAATTCGTTCTGACAAGAATCTTCTCATTCCAGTGAACG
ATGACTTTAGTGTTACAGATGTAGTAGCCATGGATTGCGAAATGGTTGGTGTGGGTCAAGGTAACAGAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGAAAT
GTTATATATGACGAGTTTGTGCGACCCATAGAGCGCGTTGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCTGAAGAAAGCGAAGGATTTCCCAACAGT
CCAGAAGAAGGTTGCAGACTTGATTAAAGGAAAGATTGTCGTTGGCCATGCCTTGTGTAATGACTTTAAGGCATTGCTCTTAAGCCATCCCAAGAAAGATTTGAGAGACA
CCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTCCGCCATCTGGCAGCCGAGTTTCTTGGTGTCGAGATCCAAAATGGGGAGCATTGTCCTGTTAAA
GATGCTCGATCTGCAATGCTGCTGTATCAGAAGAAAAGGAAAGAGTGGGAAAAGAGTCTCAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCTAGGAA
GAAATCCAAGGATGGAGGTGGTTTT
mRNA sequenceShow/hide mRNA sequence
ATTGATTATAAATTAGTAGTTGAAACCTCCGCCCTTCTGTTTTCCGGTTTAGGGCCGTCGCGTCGGGGAGAAGACGAAGACGGCCGAAATTCGATAGCCATTAGAATGCG
ACTGAAGGAGCGCTGAAATTGGAGCTTCAAGAACATGGAACCTCAGCCTCAGCTCAAGAACAGCCCTAAACCGAAGCAGATGAACCCCAATTGGGCGCTACTCCAACAAA
AGCTGAAAAGCCATGCTTCGAAGCATCCCAGGTTCTCTAATGTTCCAAAATTCGATACTTCTAACTCTGTTTTGGGTAAACGCAAGGAAAGATCTGATGTGGACTCAATT
CGTTCTGACAAGAATCTTCTCATTCCAGTGAACGATGACTTTAGTGTTACAGATGTAGTAGCCATGGATTGCGAAATGGTTGGTGTGGGTCAAGGTAACAGAAGTGCCCT
TGGACGAGTTACACTGGTAAACAAATGGGGAAATGTTATATATGACGAGTTTGTGCGACCCATAGAGCGCGTTGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCT
GCGACCTGAAGAAAGCGAAGGATTTCCCAACAGTCCAGAAGAAGGTTGCAGACTTGATTAAAGGAAAGATTGTCGTTGGCCATGCCTTGTGTAATGACTTTAAGGCATTG
CTCTTAAGCCATCCCAAGAAAGATTTGAGAGACACCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTCCGCCATCTGGCAGCCGAGTTTCTTGGTGT
CGAGATCCAAAATGGGGAGCATTGTCCTGTTAAAGATGCTCGATCTGCAATGCTGCTGTATCAGAAGAAAAGGAAAGAGTGGGAAAAGAGTCTCAAATCTGAAATGAAGC
TCAAATTGAAGCAGAAGAAACGCAAGCCTAGGAAGAAATCCAAGGATGGAGGTGGTTTT
Protein sequenceShow/hide protein sequence
MEPQPQLKNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGN
VIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVK
DARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF