; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g0879 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g0879
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationMC11:7478447..7478896
RNA-Seq ExpressionMC11g0879
SyntenyMC11g0879
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]7.42e-7178.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPPS      TLLFP ++SH SVVSI FPTS FLH P HA P   +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.26e-6575.33Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL     RPPS      T LFP+++SH SVVSIPFP+S FLH P H S     MAKSPKS+SSEQK+SHEGSV ESLPNGMFRV+LDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR RS TKD SS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]3.40e-6976.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPPS      TLLFP+++SH S+ SI FPTS FLH P HASP   +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDN+D
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR+RS TKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

XP_022139601.1 uncharacterized protein LOC111010461 [Momordica charantia]5.05e-100100Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]3.68e-7178Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++T  LQFPLL  +H RPPS      TL FP+++SH SVVSI FPT+ FLH P HAS    +MAKSPK+D+SEQKWSHEGSV ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein1.65e-6976.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPPS      TLLFP+++SH S+ SI FPTS FLH P HASP   +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDN+D
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR+RS TKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-13.59e-7178.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPPS      TLLFP ++SH SVVSI FPTS FLH P HA P   +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1CD60 uncharacterized protein LOC1110104612.45e-100100Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like1.75e-6474.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL     RPPS      T LFP+++SH SVVSIPFP+S FLH P H       MAKSPKS+SSEQK+SHEGSV ESLPNGMFRV+LDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR RS TKD SS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769473.10e-6473.79Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN L+FPLL   H RPPS      TL FP+++SH SVVSI FPTS FL  P H   R  +MAK PKSDS+EQKWS+EGS+ ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST
        LILGYI GKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR RSST
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic5.2e-3082.67Show/hide
Query:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS
        EQKW+HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST+GRI+YRLR+  KDS
Subjt:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS

Q09G11 Translation initiation factor IF-1, chloroplastic4.0e-3082.89Show/hide
Query:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSS
        EQKW HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST+GRI+YRLRS  KDS+
Subjt:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic1.2e-2982.67Show/hide
Query:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS
        EQKW HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST+GRI+YRLR+  KDS
Subjt:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic2.1e-3159.7Show/hide
Query:  SSLST-LLFPSLRSHP-------SVVSIP--FPTSTFLHIP--YHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIR
        +SL T +L P    HP       S +++P    T +FL  P    A+P L   + +    S EQKW HEG + ESLPNGMFRVRLDNEDLILGYISGKIR
Subjt:  SSLST-LLFPSLRSHP-------SVVSIP--FPTSTFLHIP--YHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIR

Query:  KNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST
        KN+VRILPGDRV++EV+RYDS+KGRIVYRLRSST
Subjt:  KNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST

Q94KR9 Translation initiation factor IF-1, chloroplastic4.0e-3083.1Show/hide
Query:  SSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLR
        S EQKW+HEGS+TESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV+IEVSRYDS+KGRI+YRLR
Subjt:  SSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLR

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.8e-2265.79Show/hide
Query:  PKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRS
        P+      K   EG VTESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V++E+S YDSTKGRI++R+ S
Subjt:  PKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCA
TCCCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACATCCCTTACCATGCTTCGCCAAGGCTCTTTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCG
AGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATT
CGAAAGAATTTTGTGCGTATTTTGCCTGGAGATAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGA
TTCATCTTCA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCA
TCCCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACATCCCTTACCATGCTTCGCCAAGGCTCTTTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCG
AGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATT
CGAAAGAATTTTGTGCGTATTTTGCCTGGAGATAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGA
TTCATCTTCA
Protein sequenceShow/hide protein sequence
MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKI
RKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS