; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g1074 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g1074
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationMC11:9177379..9177734
RNA-Seq ExpressionMC11g1074
SyntenyMC11g1074
Gene Ontology termsGO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044544.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]2.71e-4046.71Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +RQVW HNL QEL IL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN++                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L++I+ M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

KAE8649090.1 hypothetical protein Csa_014788 [Cucumis sativus]2.14e-4048.5Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +RQVW HNL QELAIL+D L +FPV+  DTEFPGFLRST RGAP E  YQDLKFNV+                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L+IIK M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

TYK17042.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]1.24e-3947.83Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNV----------------------------DFDFQ-----------
        +RQVW HNL QEL IL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN+                            DFD Q           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNV----------------------------DFDFQ-----------

Query:  ----KHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
            K R  GIPS EFR  F PI +S +I+KW+TFHG +DV YLL L++I+ M +SM  FA
Subjt:  ----KHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

XP_004151393.1 putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]2.68e-4148.5Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +RQVW HNL QELAIL+D L +FPV+  DTEFPGFLRST RGAP E  YQDLKFNV+                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L+IIK M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

XP_008454486.1 PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]4.31e-3946.11Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +R+VW HN  QELAIL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN++                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L++I+ M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

TrEMBL top hitse value%identityAlignment
A0A0A0KTU4 Poly(A)-specific ribonuclease1.30e-4148.5Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +RQVW HNL QELAIL+D L +FPV+  DTEFPGFLRST RGAP E  YQDLKFNV+                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L+IIK M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

A0A1S3BY95 Poly(A)-specific ribonuclease2.09e-3946.11Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +R+VW HN  QELAIL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN++                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L++I+ M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

A0A5A7TN62 Poly(A)-specific ribonuclease1.31e-4046.71Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +RQVW HNL QEL IL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN++                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L++I+ M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

A0A5D3CZR2 Poly(A)-specific ribonuclease5.98e-4047.83Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNV----------------------------DFDFQ-----------
        +RQVW HNL QEL IL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN+                            DFD Q           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNV----------------------------DFDFQ-----------

Query:  ----KHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
            K R  GIPS EFR  F PI +S +I+KW+TFHG +DV YLL L++I+ M +SM  FA
Subjt:  ----KHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

A0A5D3D333 Poly(A)-specific ribonuclease2.09e-3946.11Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------
        +R+VW HN  QELAIL+D L +FPV+A DTEFPGFLRST RGAP E  YQDLKFN++                                           
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD-------------------------------------------

Query:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA
              F+F+K R  GIPS EFR  F PI  S RI+KW+TFHG YDV YLL L++I+ M ESM  FA
Subjt:  ------FDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRFA

SwissProt top hitse value%identityAlignment
O64773 Probable CCR4-associated factor 1 homolog 54.0e-0929.45Show/hide
Query:  QVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD---------------------------------------------
        +VW  N + E+  + D L     +A DTEFPG L+ T   A  E  Y+D+KFNVD                                             
Subjt:  QVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD---------------------------------------------

Query:  -FDFQKHRTHGIPSVEFRLRFHPICYS--GRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
          D  K R  GI   EF + F  I     G++ +WVTF G YD  YLL  L  K + E+   F
Subjt:  -FDFQKHRTHGIPSVEFRLRFHPICYS--GRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

Q9S9P2 Probable CCR4-associated factor 1 homolog 26.1e-1028.57Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAP--------AEESYQDLKFNVD-----------------------------------
        IR+VW+HNL QE+A++  S+  FP VA DTEFPG +  T    P         E +Y  LK NV+                                   
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAP--------AEESYQDLKFNVD-----------------------------------

Query:  --------------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
                             D +K+   G+ +  F   L    +  + +I  WVTFH  YD GYLL LL  K + E +S F
Subjt:  --------------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

Q9SAI2 Probable CCR4-associated factor 1 homolog 62.2e-0727.12Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFL---RSTWRGAPAEESYQDLKFNVD----------------------------------------
        IR+VW+ NL++E+ ++ D +  FP VA DTEFPG +     T++ + A+  Y+ LK NV+                                        
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFL---RSTWRGAPAEESYQDLKFNVD----------------------------------------

Query:  ---------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
                        D  K+   GI S  F   L    I  +  +  WVTFH  YD GYLL LL  + + +S + F
Subjt:  ---------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

Q9SHJ0 Probable CCR4-associated factor 1 homolog 15.8e-0841.07Show/hide
Query:  RQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD
        R+VW  N+ +E+A + + L RFP++AFDTE+PG +  T+  + ++E Y+ +K NV+
Subjt:  RQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD

Q9SKZ2 Probable CCR4-associated factor 1 homolog 71.3e-0727.53Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFL---RSTWRGAPAEESYQDLKFNVD----------------------------------------
        IR+VW+ NL  E+A++ + +  FP VA DTEFPG +     T++    E  Y+ LK NV+                                        
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFL---RSTWRGAPAEESYQDLKFNVD----------------------------------------

Query:  ----------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
                         DF K+   GI S  F   L    I  +  +  WVTFH  YD GYLL LL  + + E+ + F
Subjt:  ----------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.1e-0941.07Show/hide
Query:  RQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD
        R+VW  N+ +E+A + + L RFP++AFDTE+PG +  T+  + ++E Y+ +K NV+
Subjt:  RQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD

AT1G15920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.4e-1128.57Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAP--------AEESYQDLKFNVD-----------------------------------
        IR+VW+HNL QE+A++  S+  FP VA DTEFPG +  T    P         E +Y  LK NV+                                   
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAP--------AEESYQDLKFNVD-----------------------------------

Query:  --------------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
                             D +K+   G+ +  F   L    +  + +I  WVTFH  YD GYLL LL  K + E +S F
Subjt:  --------------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.4e-1128.57Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAP--------AEESYQDLKFNVD-----------------------------------
        IR+VW+HNL QE+A++  S+  FP VA DTEFPG +  T    P         E +Y  LK NV+                                   
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAP--------AEESYQDLKFNVD-----------------------------------

Query:  --------------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
                             D +K+   G+ +  F   L    +  + +I  WVTFH  YD GYLL LL  K + E +S F
Subjt:  --------------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

AT1G61470.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-1029.45Show/hide
Query:  QVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD---------------------------------------------
        +VW  N + E+  + D L     +A DTEFPG L+ T   A  E  Y+D+KFNVD                                             
Subjt:  QVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVD---------------------------------------------

Query:  -FDFQKHRTHGIPSVEFRLRFHPICYS--GRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
          D  K R  GI   EF + F  I     G++ +WVTF G YD  YLL  L  K + E+   F
Subjt:  -FDFQKHRTHGIPSVEFRLRFHPICYS--GRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.1e-0927.53Show/hide
Query:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFL---RSTWRGAPAEESYQDLKFNVD----------------------------------------
        IR+VW+ NL  E+A++ + +  FP VA DTEFPG +     T++    E  Y+ LK NV+                                        
Subjt:  IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFL---RSTWRGAPAEESYQDLKFNVD----------------------------------------

Query:  ----------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF
                         DF K+   GI S  F   L    I  +  +  WVTFH  YD GYLL LL  + + E+ + F
Subjt:  ----------------FDFQKHRTHGIPSVEFR--LRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIMQESMSRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCGACAAGTCTGGTCCCACAATCTCCGGCAAGAGCTGGCCATTCTCCACGACTCTCTCTCCCGCTTTCCGGTGGTCGCCTTCGACACTGAGTTCCCGGGGTTCCTCCG
ATCCACCTGGAGAGGAGCTCCGGCGGAAGAATCCTACCAAGATCTCAAGTTCAATGTGGACTTCGATTTCCAAAAACACAGGACTCACGGAATCCCATCTGTCGAGTTCC
GACTCCGGTTCCATCCCATATGCTATAGTGGTCGGATCTCCAAATGGGTCACCTTCCACGGCTTCTACGATGTCGGTTACCTGCTCAACCTACTCATCATCAAAATCATG
CAGGAATCCATGTCCCGCTTCGCT
mRNA sequenceShow/hide mRNA sequence
ATTCGACAAGTCTGGTCCCACAATCTCCGGCAAGAGCTGGCCATTCTCCACGACTCTCTCTCCCGCTTTCCGGTGGTCGCCTTCGACACTGAGTTCCCGGGGTTCCTCCG
ATCCACCTGGAGAGGAGCTCCGGCGGAAGAATCCTACCAAGATCTCAAGTTCAATGTGGACTTCGATTTCCAAAAACACAGGACTCACGGAATCCCATCTGTCGAGTTCC
GACTCCGGTTCCATCCCATATGCTATAGTGGTCGGATCTCCAAATGGGTCACCTTCCACGGCTTCTACGATGTCGGTTACCTGCTCAACCTACTCATCATCAAAATCATG
CAGGAATCCATGTCCCGCTTCGCT
Protein sequenceShow/hide protein sequence
IRQVWSHNLRQELAILHDSLSRFPVVAFDTEFPGFLRSTWRGAPAEESYQDLKFNVDFDFQKHRTHGIPSVEFRLRFHPICYSGRISKWVTFHGFYDVGYLLNLLIIKIM
QESMSRFA