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MC11g1100 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g1100
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationMC11:9413152..9413310
RNA-Seq ExpressionMC11g1100
SyntenyMC11g1100
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009536 - plastid (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KZN01535.1 hypothetical protein DCAR_010289 [Daucus carota subsp. sativus]2.26e-2796.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

OMP13067.1 hypothetical protein COLO4_02335, partial [Corchorus olitorius]3.18e-2794.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

PHT94084.1 hypothetical protein T459_01966 [Capsicum annuum]9.96e-2894.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVG+ME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

TLX69649.1 DNA-directed RNA polymerase subunit beta, partial [Labilibacter sediminis]9.83e-2896.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

WP_199287517.1 hypothetical protein, partial [Photobacterium chitinilyticum]1.55e-2794.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

TrEMBL top hitse value%identityAlignment
A0A161WS87 DNA-directed RNA polymerase1.10e-2796.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

A0A1R3L182 DNA-directed RNA polymerase (Fragment)1.54e-2794.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

A0A2G3AIN2 DNA-directed RNA polymerase4.82e-2894.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVG+ME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

A0A444JHR1 DNA-directed RNA polymerase (Fragment)7.51e-2894.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

A0A5R9QKW6 DNA-directed RNA polymerase (Fragment)4.76e-2896.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

SwissProt top hitse value%identityAlignment
Q0G9X0 DNA-directed RNA polymerase subunit beta4.9e-2396.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

Q3C1G7 DNA-directed RNA polymerase subunit beta4.9e-2396.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

Q49L06 DNA-directed RNA polymerase subunit beta4.9e-2396.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

Q4VZP1 DNA-directed RNA polymerase subunit beta4.9e-2396.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

Q8S8X9 DNA-directed RNA polymerase subunit beta4.9e-2396.23Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF

Arabidopsis top hitse value%identityAlignment
AT1G29940.1 nuclear RNA polymerase A25.5e-0644Show/hide
Query:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME
        + +G  Y  +L H V DK   RS+G    +T QP++GR + GG R GEME
Subjt:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME

AT3G23780.1 nuclear RNA polymerase D2A8.8e-0434Show/hide
Query:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME
        + +G  +  +L+H  +DK+  R++G    +T+QP+  R + GG + GEME
Subjt:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME

AT4G21710.1 DNA-directed RNA polymerase family protein2.0e-0848Show/hide
Query:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME
        + +G  Y  +L H VDDKIH R  G   ++T+QP  GR++ GG R GEME
Subjt:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME

AT5G45140.1 nuclear RNA polymerase C24.5e-0850Show/hide
Query:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME
        + +G  Y  KL H V DK+H R SG   ++T+QP  G++K GG RVGEME
Subjt:  VIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEME

ATCG00190.1 RNA polymerase subunit beta7.7e-2494.34Show/hide
Query:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF
        PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEME +
Subjt:  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAG
AGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGACGTTT
mRNA sequenceShow/hide mRNA sequence
CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAG
AGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGACGTTT
Protein sequenceShow/hide protein sequence
PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMETF