CuGenDBv2

Gene ID	MC11g1118
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Small nuclear ribonucleoprotein Sm D2
Genome location	MC11:9613501..9616546
RNA-Seq Expression	MC11g1118
Synteny	MC11g1118
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027248 - Small nuclear ribonucleoprotein Sm D2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044802.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa]

1.13e-60

89.81

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Query:  EMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV
        +MS+PMEE++SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSV
Subjt:  EMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

XP_004146504.1 small nuclear ribonucleoprotein Sm D2 [Cucumis sativus]

6.93e-61

90.65

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE++SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_022942850.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata]

1.40e-60

90.65

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE+++KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQPINKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_022983472.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima]

1.98e-60

89.72

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE+++KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

XP_027340559.1 small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius]

1.98e-60

89.72

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE+++KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BTT5 Small nuclear ribonucleoprotein Sm D2

3.35e-61

90.65

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE++SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A5A7TNA0 Small nuclear ribonucleoprotein Sm D2

5.45e-61

89.81

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Query:  EMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV
        +MS+PMEE++SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSV
Subjt:  EMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

A0A6J1EM19 Small nuclear ribonucleoprotein Sm D2

3.35e-61

90.65

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE++SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A6J1FX13 Small nuclear ribonucleoprotein Sm D2

6.76e-61

90.65

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE+++KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQPINKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

A0A6J1J3W3 Small nuclear ribonucleoprotein Sm D2

3.35e-61

90.65

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Query:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI
        MS+PMEE++SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KAQP+NKDRFISKMFLRGDSVI
Subjt:  MSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVI

Query:  IVLRNPK
        IVLRNPK
Subjt:  IVLRNPK

SwissProt top hits

e value

%identity

Alignment

P62316 Small nuclear ribonucleoprotein Sm D2

1.1e-41

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Query:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII
        S+   EE  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AF  HCN+VLENV+EMWTE PKSGKGK K++P+NKDR+ISKMFLRGDSVI+
Subjt:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII

Query:  VLRNP
        VLRNP
Subjt:  VLRNP

P62317 Small nuclear ribonucleoprotein Sm D2

1.1e-41

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Query:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII
        S+   EE  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AF  HCN+VLENV+EMWTE PKSGKGK K++P+NKDR+ISKMFLRGDSVI+
Subjt:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII

Query:  VLRNP
        VLRNP
Subjt:  VLRNP

Q18786 Probable small nuclear ribonucleoprotein Sm D2

1.0e-36

72.38

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Query:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII
        S+   EE +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AF  HCN+VLENV+EMWTE PK+GKGK KA+ + KDRFISKMFLRGDSVI+
Subjt:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII

Query:  VLRNP
        V++NP
Subjt:  VLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D2

1.1e-41

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Query:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII
        S+   EE  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AF  HCN+VLENV+EMWTE PKSGKGK K++P+NKDR+ISKMFLRGDSVI+
Subjt:  SQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVII

Query:  VLRNP
        VLRNP
Subjt:  VLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D2

5.3e-41

75.45

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Query:  LICEMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRG
        L+   S+   EE ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AF  HCN+VLENV+EMWTE P++GKGK K +P+NKDRFISKMFLRG
Subjt:  LICEMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRG

Query:  DSVIIVLRNP
        DSVI+VLRNP
Subjt:  DSVIIVLRNP

Arabidopsis top hits

e value

%identity

Alignment

AT2G47640.1 Small nuclear ribonucleoprotein family protein

1.9e-46

84.4

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Query:  MSQPMEEESS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDS
        MS+PMEE+++  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KA P+N+DRFISKMFLRGDS
Subjt:  MSQPMEEESS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDS

Query:  VIIVLRNPK
        VIIVLRNPK
Subjt:  VIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein

1.5e-46

85.19

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Query:  MSQPMEEESS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV
        MS+PMEE+++ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KA P+N+DRFISKMFLRGDSV
Subjt:  MSQPMEEESS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein

1.5e-46

85.19

Show/hide

Query:  MSQPMEEESS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV
        MS+PMEE+++ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KA P+N+DRFISKMFLRGDSV
Subjt:  MSQPMEEESS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein

1.9e-46

84.4

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Query:  MSQPMEEESS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDS
        MS+PMEE+++  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KA P+N+DRFISKMFLRGDS
Subjt:  MSQPMEEESS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDS

Query:  VIIVLRNPK
        VIIVLRNPK
Subjt:  VIIVLRNPK

AT3G62840.2 Small nuclear ribonucleoprotein family protein

1.5e-46

85.19

Show/hide

Query:  MSQPMEEESS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV
        MS+PMEE+++ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAF  HCN+VLENVREMWTE PK+GKGK KA P+N+DRFISKMFLRGDSV
Subjt:  MSQPMEEESS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAF--HCNIVLENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

Sequences

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CDS sequence

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CCCCTTTTGCCGCTTTGCCTCTATAAATTCCAGGTAATTGCCGCTCATCAAATTCTTCAAAGTGAAAAAGAAACGCTCAGATCTGAAGTTTCTTCTAATTTGGTTGCCAG
GTTTACTACTAGAAGAGCATCAGATAAGTACTTCCTTATATGCGAGATGAGCCAACCAATGGAAGAGGAATCTAGCAAGAACGAGGAAGAGGAATTCAACACTGGTCCAC
TTTCTGTTCTCATGATGAGTGTAAAAAACAACACTCAGGTTCTTATCAACTGTCGAAACAATAAAAAGCTTTTGGGACGAGTGAGAGCCTTCCACTGTAACATTGTTTTG
GAAAATGTCAGAGAAATGTGGACTGAGGCCCCTAAAAGTGGAAAAGGGAAGAATAAAGCACAGCCTATAAACAAAGACAGATTCATCAGCAAGATGTTCTTGAGAGGAGA
CTCTGTTATTATAGTTCTCAGGAATCCCAAA

mRNA sequence

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CCCCCTTTTGCCGCTTTGCCTCTATAAATTCCAGGTAATTGCCGCTCATCAAATTCTTCAAAGTGAAAAAGAAACGCTCAGATCTGAAGTTTCTTCTAATTTGGTTGCCA
GGTTTACTACTAGAAGAGCATCAGATAAGTACTTCCTTATATGCGAGATGAGCCAACCAATGGAAGAGGAATCTAGCAAGAACGAGGAAGAGGAATTCAACACTGGTCCA
CTTTCTGTTCTCATGATGAGTGTAAAAAACAACACTCAGGTTCTTATCAACTGTCGAAACAATAAAAAGCTTTTGGGACGAGTGAGAGCCTTCCACTGTAACATTGTTTT
GGAAAATGTCAGAGAAATGTGGACTGAGGCCCCTAAAAGTGGAAAAGGGAAGAATAAAGCACAGCCTATAAACAAAGACAGATTCATCAGCAAGATGTTCTTGAGAGGAG
ACTCTGTTATTATAGTTCTCAGGAATCCCAAA

Protein sequence

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PLLPLCLYKFQVIAAHQILQSEKETLRSEVSSNLVARFTTRRASDKYFLICEMSQPMEEESSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFHCNIVL
ENVREMWTEAPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

MC11g1118 (gene) of Bitter gourd (Dali-11) v1 genome