CuGenDBv2

Gene ID	MC11g1149
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	transcription factor MYB52-like
Genome location	MC11:9957602..9959310
RNA-Seq Expression	MC11g1149
Synteny	MC11g1149
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domains	IPR001005 - SANT/Myb domain IPR009057 - Homeobox-like domain superfamily IPR017930 - Myb domain

Homology

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GenBank top hits

e value

%identity

Alignment

EEF32074.1 r2r3-myb transcription factor, putative [Ricinus communis]

5.43e-64

61.93

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+++G  NWN+IAEKLQGRSG KSCRLRWFNQLDPRINR PF+EEEEERL+A+HRIHGN+WA+IARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHG--GGRFPYGPTTAGVFFR-----QKSAIILNADIKRDEESADP----KDIVPFIDFLGVGISSST
        RK R+  ++      +    P     F +      KS +I NA  +RD+E  D     K  + FIDFL VG SSST
Subjt:  RKHRQHFKIHG--GGRFPYGPTTAGVFFR-----QKSAIILNADIKRDEESADP----KDIVPFIDFLGVGISSST

KAG0492273.1 hypothetical protein HPP92_005671 [Vanilla planifolia]

4.88e-65

62.86

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRP EDEKL+RLVQ+FG +NWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPFSEEEEERL+ AHRIHGN+WALIARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRF---PYGPTTAGVFFRQKS-----AIILNADIKRDE-------ESADPKDIVPFIDFLGVG
        RK R+  K  G       P+G  ++     + S     A I +  + R E        S +    +PFIDFLG+G
Subjt:  RKHRQHFKIHGGGRF---PYGPTTAGVFFRQKS-----AIILNADIKRDE-------ESADPKDIVPFIDFLGVG

KAG0494368.1 hypothetical protein HPP92_005362 [Vanilla planifolia]

1.39e-64

61.36

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRP EDEKL+RLVQ+FG +NWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPFSEEEEERL+ AHRIHGN+WALIARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRF---PYGPTTAGVFFRQKSAI----------ILNADI---KRDEESADPKDIVPFIDFLGVG
        RK R+  K  G       P+G  ++     + S +          +L +++    R       K++ PFIDFLG+G
Subjt:  RKHRQHFKIHGGGRF---PYGPTTAGVFFRQKSAI----------ILNADI---KRDEESADPKDIVPFIDFLGVG

XP_010260471.1 PREDICTED: myb-related protein 3R-1-like [Nelumbo nucifera]

3.94e-64

85.59

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL++LV+Q+G +NWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPFSEEEEERL+AAHR+HGNKWALIARL PGRTDNAVKNHWHV++A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHG
        RKHR+  K+HG
Subjt:  RKHRQHFKIHG

XP_022153715.1 transcription factor MYB52-like [Momordica charantia]

6.06e-120

99.4

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK
        RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK
Subjt:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK

TrEMBL top hits

e value

%identity

Alignment

A0A0S3RDT7 Uncharacterized protein

3.80e-64

74.62

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDE L++LV+Q+GA+NWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPF+EEEEERL+AAHRIHGNKWALIARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKS
        RK R+  K+ G   F      +  F  +++
Subjt:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKS

A0A1U8A2L0 myb-related protein 3R-1-like

1.91e-64

85.59

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL++LV+Q+G +NWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPFSEEEEERL+AAHR+HGNKWALIARL PGRTDNAVKNHWHV++A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHG
        RKHR+  K+HG
Subjt:  RKHRQHFKIHG

A0A6J1DHL3 transcription factor MYB52-like

2.93e-120

99.4

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK
        RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK
Subjt:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK

B9SWD8 R2r3-myb transcription factor, putative

2.63e-64

61.93

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+++G  NWN+IAEKLQGRSG KSCRLRWFNQLDPRINR PF+EEEEERL+A+HRIHGN+WA+IARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHG--GGRFPYGPTTAGVFFR-----QKSAIILNADIKRDEESADP----KDIVPFIDFLGVGISSST
        RK R+  ++      +    P     F +      KS +I NA  +RD+E  D     K  + FIDFL VG SSST
Subjt:  RKHRQHFKIHG--GGRFPYGPTTAGVFFR-----QKSAIILNADIKRDEESADP----KDIVPFIDFLGVGISSST

I6LFW8 R2R3-MYB transcription factor MYB3 (Fragment)

1.12e-63

79.66

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+Q+G +NWNSIAEKLQGRSG KSCRLRWFNQLDPRINRRPF+EEEEERL+AAHR+HGNKWA+IARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRFPYG
        RK R+  +I+G  R   G
Subjt:  RKHRQHFKIHGGGRFPYG

SwissProt top hits

e value

%identity

Alignment

Q5NBM8 Transcription factor CSA

2.6e-46

81.9

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAED KL+ LV Q+G +NWN IAEKL GRSG KSCRLRWFNQLDPRINRR F+EEEEERLMAAHR +GNKWALIARL PGRTDNAVKNHWHV++A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQ
        R+HR+
Subjt:  RKHRQ

Q6R0C4 Transcription factor MYB52

5.2e-47

75.22

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+QFG  NWN+IA+KL GRSG KSCRLRWFNQLDPRINR PF+EEEEERL+A+HRIHGN+W++IAR  PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGG
        R+ R+  K+   G
Subjt:  RKHRQHFKIHGGG

Q9FX36 Transcription factor MYB54

1.8e-47

60.76

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+Q+G  NWN+IA KL GRSG KSCRLRWFNQLDPRINR PF+EEEEERL+AAHRIHGN+W++IARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVP--FIDF
        R+ RQ  K     R     T++      +  ++ +     +  S D K I P  FI+F
Subjt:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVP--FIDF

Q9LQX5 Transcription factor MYB117

5.8e-46

79.25

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAED KL+ LV  +G +NWN IAEKLQGRSG KSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARL PGRTDN+VKNHWHV++A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQH
        RK+R+H
Subjt:  RKHRQH

Q9SEZ4 Transcription factor MYB105

4.9e-45

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAED KL+ LV  +G +NWN IAEKLQGRSG KSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARL PGRTDN+VKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQ
        RK R+
Subjt:  RKHRQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G17950.1 myb domain protein 52

3.7e-48

75.22

Show/hide

Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+QFG  NWN+IA+KL GRSG KSCRLRWFNQLDPRINR PF+EEEEERL+A+HRIHGN+W++IAR  PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGG
        R+ R+  K+   G
Subjt:  RKHRQHFKIHGGG

AT1G26780.1 myb domain protein 117

4.1e-47

79.25

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAED KL+ LV  +G +NWN IAEKLQGRSG KSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARL PGRTDN+VKNHWHV++A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQH
        RK+R+H
Subjt:  RKHRQH

AT1G26780.2 myb domain protein 117

4.1e-47

79.25

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAED KL+ LV  +G +NWN IAEKLQGRSG KSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARL PGRTDN+VKNHWHV++A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQH
        RK+R+H
Subjt:  RKHRQH

AT1G69560.1 myb domain protein 105

3.5e-46

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAED KL+ LV  +G +NWN IAEKLQGRSG KSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARL PGRTDN+VKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQ
        RK R+
Subjt:  RKHRQ

AT1G73410.1 myb domain protein 54

1.3e-48

60.76

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Query:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA
        RGHWRPAEDEKL+ LV+Q+G  NWN+IA KL GRSG KSCRLRWFNQLDPRINR PF+EEEEERL+AAHRIHGN+W++IARL PGRTDNAVKNHWHVI+A
Subjt:  RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIA

Query:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVP--FIDF
        R+ RQ  K     R     T++      +  ++ +     +  S D K I P  FI+F
Subjt:  RKHRQHFKIHGGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVP--FIDF

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

CGGGGTCATTGGCGGCCGGCCGAGGACGAGAAACTCCAACGACTCGTTCAACAGTTTGGTGCCCGAAACTGGAACTCCATCGCTGAGAAGCTCCAAGGAAGATCAGGCAG
GAAGAGTTGCAGATTGAGATGGTTCAATCAACTAGATCCAAGAATAAACCGAAGGCCGTTCAGTGAAGAAGAAGAAGAGAGATTAATGGCGGCGCATCGGATCCACGGCA
ACAAATGGGCCTTAATCGCCAGGCTTTTGCCCGGAAGAACCGATAACGCCGTCAAAAATCACTGGCACGTAATAATCGCCAGAAAGCACAGGCAACACTTCAAAATACAC
GGCGGCGGACGGTTTCCGTACGGACCAACAACTGCGGGCGTTTTCTTCAGACAGAAATCGGCGATCATTTTGAACGCGGACATCAAACGAGACGAGGAATCGGCTGACCC
GAAGGATATTGTTCCGTTCATAGATTTTCTTGGCGTTGGGATCTCTTCTTCAACACCCAACAAATAATTTTTTATTTTGTTATATATATAATATTATATATATATGGTAG
AGATTAGGGTTTTTTTTTTAATCTTATTTGATTGTTTGGATAGTAAGTTAATTGAACTTAGATAACTCTGGTAGGATGTTGAATTTATCCAACTCAATCTTAACGATTAA
GTATTTGAGTTGGATTAGGTTACTTGAAATGGTGTAGTTTGTAGAAAATTTATGACGAGAAAGAGTAAAGAGATCGGAAAATCAGAGTTGTATTCTTTTAAATGTTTTCA
GTTTTTTTAGATATATATTTGGTAGCAGATTTGTTAATTGGATATCAA

Protein sequence

Show/hide protein sequence

RGHWRPAEDEKLQRLVQQFGARNWNSIAEKLQGRSGRKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLLPGRTDNAVKNHWHVIIARKHRQHFKIH
GGGRFPYGPTTAGVFFRQKSAIILNADIKRDEESADPKDIVPFIDFLGVGISSSTPNK

MC11g1149 (gene) of Bitter gourd (Dali-11) v1 genome