| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_008454536.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] | 5.48e-99 | 97.99 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| XP_011653886.2 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] | 5.48e-99 | 97.99 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDG+KAS+GGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| XP_011659113.1 sm-like protein LSM4 [Cucumis sativus] | 1.29e-97 | 97.32 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPG RPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| XP_022143617.1 probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia] | 4.69e-100 | 100 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| XP_022926288.1 sm-like protein LSM4 isoform X1 [Cucurbita moschata] | 1.84e-97 | 96.64 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETK+RADRKP G+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0K9I4 U6 snRNA-associated Sm-like protein LSm4 | 6.25e-98 | 97.32 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPG RPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| A0A1S3BYD6 U6 snRNA-associated Sm-like protein LSm4 | 2.65e-99 | 97.99 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| A0A6J1CRC5 U6 snRNA-associated Sm-like protein LSm4 | 2.27e-100 | 100 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| A0A6J1EHL8 U6 snRNA-associated Sm-like protein LSm4 | 8.89e-98 | 96.64 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETK+RADRKP G+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| A0A6J1J2N4 U6 snRNA-associated Sm-like protein LSm4 | 8.89e-98 | 96.64 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETK+RADRKP G+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GREDGPGGRPAKGMGRGFDDG+KA+SGGRGKGGPGGKPGANRVGGRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| F4K4E3 Sm-like protein LSM4 | 2.2e-52 | 76.51 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE K+R DRKP G+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
G +DG G R GRG+G GK G NR GRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| Q43582 Probable U6 snRNA-associated Sm-like protein LSm4 | 2.6e-58 | 81.33 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY+RGNTIKYLRVPDEVIDKVQEE KSR DRKP G+GR R R
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: -GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GR+D GR KG+GRG DDG + GRGKGGP K G R GGRGRG
Subjt: -GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| Q9LGE6 Probable U6 snRNA-associated Sm-like protein LSm4 | 2.9e-57 | 81.46 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGIGRGRG
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIKYLRVPDEVIDKVQEET KSR+DR+P G+GRGRG
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGIGRGRG
Query: RGR-EDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
RG PGGR G+GRG DDG GGRG+GG GGK G + GGRGRG
Subjt: RGR-EDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 | 9.4e-40 | 64.29 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE GRGRG
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRG-FDDGSKASSGGRGKGGPGGKPG
++ GR G GRG F + G G+G P KPG
Subjt: GREDGPGGRPAKGMGRG-FDDGSKASSGGRGKGGPGGKPG
|
|
| Q9ZRU9 Probable U6 snRNA-associated Sm-like protein LSm4 | 5.5e-56 | 79.33 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CYIRGNTIKYLRVPDEVIDKVQEETKSRADRKP G+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRG-FDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
GRE+G G R +G GR +KA RG+G GK G GGRGRG
Subjt: GREDGPGGRPAKGMGRG-FDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G20580.1 Small nuclear ribonucleoprotein family protein | 3.8e-12 | 34.06 | Show/hide |
Query: LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGIGR
+P+ LL A GH + VELK+GE Y G ++ C+ N L ++ T+KDG + ++ +IRG+ ++++ +PD + ++ K ++ LG+GR
Subjt: LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGIGR
Query: GRGRGREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGP
GRG R G+PA G GRG +GGRG P
Subjt: GRGRGREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGP
|
|
| AT1G76300.1 snRNP core protein SMD3 | 5.5e-11 | 32.09 | Show/hide |
Query: LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVID-KVQEETKSRADRKPLGIGRGRGR
+P+ LL + GH + VE+K+GE Y G ++ C+ N L + T+KDG + ++ +IRG+ +++L +PD + + + ++ + + LG+GRGRG
Subjt: LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVID-KVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGP
AKG GRG + GGRG P
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGP
|
|
| AT4G02840.1 Small nuclear ribonucleoprotein family protein | 2.0e-08 | 39.6 | Show/hide |
Query: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--EVIDKVQEET------KSRADRKPLGIGRGRGRGREDGPGG
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD + + E+T K A + P G GRGRGRGR G GG
Subjt: VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--EVIDKVQEET------KSRADRKPLGIGRGRGRGREDGPGG
Query: R
R
Subjt: R
|
|
| AT4G02840.2 Small nuclear ribonucleoprotein family protein | 4.1e-06 | 36.04 | Show/hide |
Query: VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--EVIDKVQEET------KSRADRKPLGIGRGR
+ELKNG +G + + D MN HL+ V T K G + +RGN I+Y +PD + + E+T K A + P G GRGR
Subjt: VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--EVIDKVQEET------KSRADRKPLGIGRGR
Query: GRGREDGPGGR
GRGR G GGR
Subjt: GRGREDGPGGR
|
|
| AT5G27720.1 Small nuclear ribonucleoprotein family protein | 1.5e-53 | 76.51 | Show/hide |
Query: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE K+R DRKP G+GRGRGR
Subjt: MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGR
Query: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
G +DG G R GRG+G GK G NR GRGRG
Subjt: GREDGPGGRPAKGMGRGFDDGSKASSGGRGKGGPGGKPGANRVGGRGRG
|
|
