CuGenDBv2

Gene ID	MC11g1208
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S18
Genome location	MC11:11847873..11850076
RNA-Seq Expression	MC11g1208
Synteny	MC11g1208
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005829 - cytosol (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001892 - Ribosomal protein S13 IPR010979 - Ribosomal protein S13-like, H2TH IPR027437 - 30s ribosomal protein S13, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_002524340.1 40S ribosomal protein S18 [Ricinus communis]

8.91e-77

98.31

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

XP_004139687.1 40S ribosomal protein S18 [Cucumis sativus]

6.27e-77

99.15

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

XP_012073942.1 40S ribosomal protein S18 [Jatropha curcas]

3.11e-77

99.15

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

XP_021689481.1 40S ribosomal protein S18-like [Hevea brasiliensis]

2.88e-77

98.31

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

XP_022133825.1 40S ribosomal protein S18 [Momordica charantia]

2.19e-77

100

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

TrEMBL top hits

e value

%identity

Alignment

A0A067KXH7 Uncharacterized protein

1.51e-77

99.15

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

A0A0A0K7Z7 Uncharacterized protein

3.04e-77

99.15

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

A0A1Q3BYA9 Ribosomal_S13 domain-containing protein

1.51e-77

99.15

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

A0A1S3CH47 40S ribosomal protein S18

3.04e-77

99.15

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

A0A6J1BWC2 40S ribosomal protein S18

1.06e-77

100

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

SwissProt top hits

e value

%identity

Alignment

P34788 40S ribosomal protein S18

5.5e-59

95.76

Show/hide

Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

Q8ISP0 40S ribosomal protein S18

3.7e-47

73.73

Show/hide

Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLV  E+FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        N+LD KLR+DLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

Q8IT98 40S ribosomal protein S18

1.8e-46

72.03

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        M+L+  E+FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+S
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALD KLR+DLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

Q8JGS9 40S ribosomal protein S18

7.7e-45

70.34

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLV  E+FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        N LD KLR+DLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

Q90YQ5 40S ribosomal protein S18

2.9e-44

69.49

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Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLV  E+FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        N LD KLR+DLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G22780.1 Ribosomal protein S13/S18 family

3.9e-60

95.76

Show/hide

Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

AT1G34030.1 Ribosomal protein S13/S18 family

3.9e-60

95.76

Show/hide

Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

AT4G09800.1 S18 ribosomal protein

3.9e-60

95.76

Show/hide

Query:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
        MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Subjt:  MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS

Query:  NALDMKLRDDLERLKKIR
        NALDMKLRDDLERLKKIR
Subjt:  NALDMKLRDDLERLKKIR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGCTGGTAGCGAACGAGGAATTTCAGCACATTCTGCGTGTGCTGAACACGAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATCAAAGGTATTGG
AAGGCGTTTCGCTAATATCGTTTGCAAGAAGGCCGATGTCGACATGAACAAGAGGGCTGGTGAATTGACTGCTGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATC
CACGTCAATTTAAAATTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGACGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGAT
TTGGAACGGTTGAAGAAGATCAGG

mRNA sequence

Show/hide mRNA sequence

ATCAAAATAAAAACTTATCTTCGAATTTAGGGACATAATATTTTGTTTTTACTGACAAAAAGAAAAATGGTAATTTTGTTTTGAATATAATCGAAATTACGAGAATTTAG
CAAGGGTATATTTGGTCAATCTGGTCGAGGCGGAACCCTAGAGGGCTTTAAAGGCAAAATATAAAATCCTCTCCCAGTCTCCACTCGAAGATCTCCCCTGATTTTTTTTC
CCTGCCATTTGCTGCCTGCGCGAATTCTACGAAGTCCTTCCATCTTCATCCGCCATGTCGCTGGTAGCGAACGAGGAATTTCAGCACATTCTGCGTGTGCTGAACACGAA
CGTGGATGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATCAAAGGTATTGGAAGGCGTTTCGCTAATATCGTTTGCAAGAAGGCCGATGTCGACATGAACAAGAGGG
CTGGTGAATTGACTGCTGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGTCAATTTAAAATTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGAC
GGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAACGGTTGAAGAAGATCAGG

Protein sequence

Show/hide protein sequence

MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDD
LERLKKIR

MC11g1208 (gene) of Bitter gourd (Dali-11) v1 genome