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MC11g1257 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g1257
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationMC11:13577581..13577803
RNA-Seq ExpressionMC11g1257
SyntenyMC11g1257
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646043.1 hypothetical protein Csa_015641, partial [Cucumis sativus]8.88e-20100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
KHN17560.1 Small nuclear ribonucleoprotein E [Glycine soja]7.63e-2097.56Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVN+KKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
KHN31189.1 Small nuclear ribonucleoprotein E [Glycine soja]6.20e-20100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
MCI19947.1 small nuclear ribonucleoprotein E-like [Trifolium medium]1.32e-1997.56Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKS+KTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
XP_019436198.1 PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifolius]1.29e-19100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
TrEMBL top hitse value%identityAlignment
A0A2N9ELL8 Sm protein E2.72e-20100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
A0A392Q7T6 Sm protein E (Fragment)6.38e-2097.56Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKS+KTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
A0A445KAE2 Small nuclear ribonucleoprotein E6.60e-20100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
A0A6A4Q7S7 Small nuclear ribonucleoprotein E6.26e-20100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
A0A6J1DT21 Small nuclear ribonucleoprotein E6.60e-20100Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
SwissProt top hitse value%identityAlignment
A4FUI2 Small nuclear ribonucleoprotein E1.9e-1178.05Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
P62303 Small nuclear ribonucleoprotein E1.9e-1178.05Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
P62304 Small nuclear ribonucleoprotein E1.9e-1178.05Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
P62305 Small nuclear ribonucleoprotein E1.9e-1178.05Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Q7ZUG0 Small nuclear ribonucleoprotein E1.5e-1178.05Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEV++K K+RK LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein2.5e-1485.37Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLD+AEEV++KK +RK LGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
AT2G18740.2 Small nuclear ribonucleoprotein family protein1.9e-0677.78Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLG
        GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLG
AT4G30330.1 Small nuclear ribonucleoprotein family protein6.6e-1587.8Show/hide
Query:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
        GFDEYMNLVLD+AEEV++KKK+RK LGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCTTCGATGAATATATGAATTTGGTTCTCGATGATGCAGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAGACTTTAGGGAGGATACTCCTTAAAGGAGACAACATAAC
TCTGATGATGAAC
mRNA sequenceShow/hide mRNA sequence
GGCTTCGATGAATATATGAATTTGGTTCTCGATGATGCAGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAGACTTTAGGGAGGATACTCCTTAAAGGAGACAACATAAC
TCTGATGATGAAC
Protein sequenceShow/hide protein sequence
GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN