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MC11g1289 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g1289
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCCHC-type domain-containing protein
Genome locationMC11:15169595..15169915
RNA-Seq ExpressionMC11g1289
SyntenyMC11g1289
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABD32401.2 Ribonuclease H, partial [Medicago truncatula]1.53e-0638.61Show/hide
Query:  LSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEG
        L  LC  I S A+ A    +     P     SD +V+ WN+  H   +LNVD +C GT  R+  G +LR+SAG  ++  +   PNS   LLAE+ AI +G
Subjt:  LSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEG

Query:  L
        L
Subjt:  L

KAF4363279.1 hypothetical protein F8388_001820 [Cannabis sativa]1.21e-0544.62Show/hide
Query:  ESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL
        E+W   P G++ LNVD A      ++ IGA++RDS G ++AARAS+    + P +AE  A+LEGL
Subjt:  ESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL

PPS12084.1 hypothetical protein GOBAR_AA08553 [Gossypium barbadense]1.26e-0632.38Show/hide
Query:  PDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDN--IVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHA
        PD+S +  W T Y ++ K      S N L+  G +   +   W   PHG+  LNVDA     +++   GA+LRD+ G+ +AAR+         LL E + 
Subjt:  PDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDN--IVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHA

Query:  ILEGL
        +L G+
Subjt:  ILEGL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.58e-0835.51Show/hide
Query:  GKQIPDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEI
        GKQ+  +   C W+T + +       S + +P  +     +V+ W       + LN DAAC G ++    G I+RDS+ +++AA +   P  LSPLLAEI
Subjt:  GKQIPDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEI

Query:  HAILEGL
          ILEGL
Subjt:  HAILEGL

XP_024634748.1 uncharacterized protein LOC112420238 [Medicago truncatula]2.12e-0545.71Show/hide
Query:  SDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL
        SD  V+ WN+  H   +LNVD +C GT SR+  G ILR+SAG +++  +   PNS   L AE+ AI +GL
Subjt:  SDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL

TrEMBL top hitse value%identityAlignment
A0A1J3C7A8 Putative ribonuclease H protein (Fragment)2.40e-0636.26Show/hide
Query:  WITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAI
        W+ S  EK+K +  SS  N       D+ + +W   P GW+  NVD      + RS IG +LRDS G ++   A    N  SPL  EI A+
Subjt:  WITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAI

A0A2P5Y918 Uncharacterized protein6.12e-0732.38Show/hide
Query:  PDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDN--IVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHA
        PD+S +  W T Y ++ K      S N L+  G +   +   W   PHG+  LNVDA     +++   GA+LRD+ G+ +AAR+         LL E + 
Subjt:  PDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDN--IVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHA

Query:  ILEGL
        +L G+
Subjt:  ILEGL

A0A6J1DX30 uncharacterized protein LOC1110248743.18e-0835.51Show/hide
Query:  GKQIPDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEI
        GKQ+  +   C W+T + +       S + +P  +     +V+ W       + LN DAAC G ++    G I+RDS+ +++AA +   P  LSPLLAEI
Subjt:  GKQIPDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEI

Query:  HAILEGL
          ILEGL
Subjt:  HAILEGL

A0A7J6F041 CCHC-type domain-containing protein5.87e-0644.62Show/hide
Query:  ESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL
        E+W   P G++ LNVD A      ++ IGA++RDS G ++AARAS+    + P +AE  A+LEGL
Subjt:  ESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL

Q2HTL5 Ribonuclease H (Fragment)7.41e-0738.61Show/hide
Query:  LSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEG
        L  LC  I S A+ A    +     P     SD +V+ WN+  H   +LNVD +C GT  R+  G +LR+SAG  ++  +   PNS   LLAE+ AI +G
Subjt:  LSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEG

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTAAACAAATCCCAGATCTATCAGAATTATGTGCTTGGATTACCTCTTACGCAGAGAAAGCCAAGATGACCTCTTCCTCCTCATCTCTGAATCCTCTTCGTCGTTGTGG
GTCAGATAACATTGTTGAATCTTGGAATCATCTTCCACATGGTTGGATCCTTCTTAATGTCGATGCCGCTTGCTGTGGAACTAATTCGAGATCGAGGATAGGAGCAATCC
TTAGGGATTCGGCGGGGACAATTTTGGCAGCCCGTGCTTCGTCTGGCCCCAACTCCCTTAGCCCACTCCTTGCGGAAATTCATGCGATTTTGGAAGGTCTT
mRNA sequenceShow/hide mRNA sequence
GGTAAACAAATCCCAGATCTATCAGAATTATGTGCTTGGATTACCTCTTACGCAGAGAAAGCCAAGATGACCTCTTCCTCCTCATCTCTGAATCCTCTTCGTCGTTGTGG
GTCAGATAACATTGTTGAATCTTGGAATCATCTTCCACATGGTTGGATCCTTCTTAATGTCGATGCCGCTTGCTGTGGAACTAATTCGAGATCGAGGATAGGAGCAATCC
TTAGGGATTCGGCGGGGACAATTTTGGCAGCCCGTGCTTCGTCTGGCCCCAACTCCCTTAGCCCACTCCTTGCGGAAATTCATGCGATTTTGGAAGGTCTT
Protein sequenceShow/hide protein sequence
GKQIPDLSELCAWITSYAEKAKMTSSSSSLNPLRRCGSDNIVESWNHLPHGWILLNVDAACCGTNSRSRIGAILRDSAGTILAARASSGPNSLSPLLAEIHAILEGL