CuGenDBv2

Gene ID	MC11g1296
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	EAF domain-containing protein
Genome location	MC11:15374908..15385213
RNA-Seq Expression	MC11g1296
Synteny	MC11g1296
Gene Ontology terms	GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0032783 - ELL-EAF complex (cellular component) GO:0003711 - transcription elongation regulator activity (molecular function)
InterPro domains	IPR019194 - Transcription elongation factor Eaf, N-terminal IPR027093 - EAF family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579241.1 Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]

9.93e-170

78.1

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVT+EFQNNQLG+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESATTSI------TTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD
        RLERLHRAV  LRH+RQ  ES+  ++      + S  HSLT PEPRLSPP AKV KPMHMGR SFP V VEVE+IDIGEPGNTGA  V ASK  ADY+SD
Subjt:  RLERLHRAVTHLRHVRQADESATTSI------TTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD

Query:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------
        PPNVSAPSP P   NDDEHQDIDID+IFGSVSSDD NN EE+K+D GFDINVPHHNDTDDEIADVDDSGDEA+KGPNAAEALRAQVNAEGR         
Subjt:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------

Query:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
                 D+Q+SSSSSSESGSGSSSGSSSGSSDSE +DEDSVTSI
Subjt:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

XP_022151706.1 ELL-associated factor 1 [Momordica charantia]

6.67e-218

100

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA
        RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA
Subjt:  RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA

Query:  PSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSG
        PSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSG
Subjt:  PSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSG

Query:  SSSGSSSGSSDSEHSDEDSVTSI
        SSSGSSSGSSDSEHSDEDSVTSI
Subjt:  SSSGSSSGSSDSEHSDEDSVTSI

XP_022939831.1 ELL-associated factor 1 [Cucurbita moschata]

3.47e-170

78.67

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVT+EFQNNQLG+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD
        RLERLHRAV  LRH+RQ  ES      A +S + S  HSLT PEPRLSPP AKV KPMHMGR SFP V VEVE+IDIGEPGNTGA  V ASK  ADY+SD
Subjt:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD

Query:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------
        PPNVSAPSP P   NDDEHQDIDID+IFGSVSSDD NN EE+K+D GFDINVPHHNDTDDEIADVDDSGDEA+KGPNAAEALRAQVNAEGR         
Subjt:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------

Query:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
                 D+Q+SSSSSSESGSGSSSGSSSGSSDSE +DEDSVTSI
Subjt:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]

6.02e-171

78.96

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVT+EFQNNQLG+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD
        RLERLHRAV  LRH+RQ  ES      A +S + S  HSLT PEPRLSPP AKV KPMHMGR SFP V VEVE+IDIGEPGNTGA SV ASK  ADY+SD
Subjt:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD

Query:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------
        PPNVSAPSP P   NDDEHQDIDID+IFGSVSSDD NN EE+K+D GFDINVPHHNDTDDEIADVDDSGDEA+KGPNAAEALRAQVNAEGR         
Subjt:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------

Query:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
                 D+Q+SSSSSSESGSGSSSGSSSGSSDSE +DEDSVTSI
Subjt:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]

3.89e-170

76.39

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVTVEFQNNQ G+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESA-------------------TTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASS
        RLERLHRAV  LRH+RQ  ESA                   +TS   S  HSLT PEPRLSPPVAKV KPMHMGR SFP +PVEVERIDIGEPGNTGA S
Subjt:  RLERLHRAVTHLRHVRQADESA-------------------TTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASS

Query:  VAASKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVN
        V ASK +ADY+SDPPNVSA SP  G+ NDDEHQDIDID++FGSV SDDGNN EEE+++ GFDIN+PH NDTDDEIADVDDSGDEA+KGPNAAEALRAQVN
Subjt:  VAASKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVN

Query:  AEGR------------------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
        AEGR                  D Q+SSSSSS SGSGSSSGSSSGSSDSE SDEDSVTSI
Subjt:  AEGR------------------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM56 EAF domain-containing protein

2.99e-164

78.17

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+  EEPKTAPQ +RWYNLSLGPSFKDESSNKFCT RYEFKPASIDKTKPG LKKTK+NRVTVEFQN+Q G+PN++FVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESA-------TTS---------ITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAA
        RLERLHRAV  LRH+RQ  ESA       TT+          T SV HSLT PEPRLSPPV KV+KPMHMGRSSFP +PVEVERIDIGEPGN GA +VA 
Subjt:  RLERLHRAVTHLRHVRQADESA-------TTS---------ITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAA

Query:  SKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEG
        SK + +Y+SDPPNVS  SP  G+ NDDEHQDIDID+IFGSVSSDDGNN EEE+++ GFDIN+PH NDTDDEIADVDDSGDEA+KGPNAAEALRAQVNAEG
Subjt:  SKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEG

Query:  RDKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
        R +Q+SSSSSS SGSGSSSGSSS SSDSE SDEDSVTSI
Subjt:  RDKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

A0A1S3C0N3 ELL-associated factor 2

4.22e-165

76.32

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+  EEPKTAPQ +RWYNLSLGPSFKDESSNKFCT RYEFKPASIDKTKPG LKKTK+NRVTVEFQN+Q G+PN++F+GSSED K+NDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESATTSITT-------------------SVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASS
        RLERLHRAV  LRH+RQ  ESA  + T                    SV HSLT PEPRLSPPV KV KPMHMGRSSFP +PVEVERIDIGEPGN GA  
Subjt:  RLERLHRAVTHLRHVRQADESATTSITT-------------------SVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASS

Query:  VAASKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVN
        V ASK + DY+SDPPN S  SP  G+ NDDEHQDIDID+IFGSVSSDDGNN EEE+++ GFDIN+PH NDTDDEIADVDDSGDEA+KGPNAAEALRAQVN
Subjt:  VAASKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVN

Query:  AEGRDKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
        AEGR +Q+SSSSSS SGSGSSSGSSS SSDSE SDEDSVTSI
Subjt:  AEGRDKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

A0A6J1DE82 ELL-associated factor 1

3.23e-218

100

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA
        RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA
Subjt:  RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA

Query:  PSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSG
        PSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSG
Subjt:  PSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSG

Query:  SSSGSSSGSSDSEHSDEDSVTSI
        SSSGSSSGSSDSEHSDEDSVTSI
Subjt:  SSSGSSSGSSDSEHSDEDSVTSI

A0A6J1FGX9 ELL-associated factor 1

1.68e-170

78.67

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVT+EFQNNQLG+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD
        RLERLHRAV  LRH+RQ  ES      A +S + S  HSLT PEPRLSPP AKV KPMHMGR SFP V VEVE+IDIGEPGNTGA  V ASK  ADY+SD
Subjt:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD

Query:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------
        PPNVSAPSP P   NDDEHQDIDID+IFGSVSSDD NN EE+K+D GFDINVPHHNDTDDEIADVDDSGDEA+KGPNAAEALRAQVNAEGR         
Subjt:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------

Query:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
                 D+Q+SSSSSSESGSGSSSGSSSGSSDSE +DEDSVTSI
Subjt:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

A0A6J1JWD6 ELL-associated factor 1

2.91e-171

78.96

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Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVT+EFQNNQLG+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD
        RLERLHRAV  LRH+RQ  ES      A +S + S  HSLT PEPRLSPP AKV KPMHMGR SFP V VEVE+IDIGEPGNTGA SV ASK  ADY+SD
Subjt:  RLERLHRAVTHLRHVRQADES------ATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSD

Query:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------
        PPNVSAPSP P   NDDEHQDIDID+IFGSVSSDD NN EE+K+D GFDINVPHHNDTDDEIADVDDSGDEA+KGPNAAEALRAQVNAEGR         
Subjt:  PPNVSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGR---------

Query:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI
                 D+Q+SSSSSSESGSGSSSGSSSGSSDSE +DEDSVTSI
Subjt:  ---------DKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71080.1 RNA polymerase II transcription elongation factor

3.7e-68

52.89

Show/hide

Query:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF
        M+N +++EP TAP++++WY+L LG S KD+SS+KFCTLRYEFKPASIDK + GS+ K KDNRV+VEFQNNQ G+P V F GSSED KE+DAVLFFDGE F
Subjt:  MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETF

Query:  RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA
        RLERLHRAVT LRHVR   ESA  S       S    E RLS PV +  K   + RS  P VPVEVERI+IG+P N+               ++  NV A
Subjt:  RLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSA

Query:  PSPSPGMDND-DEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHH--NDTDDEIADV-DDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSS-
         SP    ++D DEHQ+ID+ EIFGS + ++ +N E+E  D G  +   +   + T++EIADV DDSG E +KG NAAEALRAQVNAE +  QTSSSSSS 
Subjt:  PSPSPGMDND-DEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHH--NDTDDEIADV-DDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSS-

Query:  ---------------ESGSGSSSGSSSGSS---DSEHSDEDSVTSI
                        SGSGS   SSSGSS        DED V S+
Subjt:  ---------------ESGSGSSSGSSSGSS---DSEHSDEDSVTSI

AT5G38050.1 RNA polymerase II transcription elongation factor

5.3e-43

41.62

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Query:  NDNKEEPKTAPQSERWYNLSLGPSFKDES---SNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDC--KENDAVLFFDG
        +++ EEPK AP+  RWYN++LGP+  + +   S KFCTLRYEFKPASID TKPG L K+KDN+VT+EFQNNQL +P V F G SED   ++ DA+LFFDG
Subjt:  NDNKEEPKTAPQSERWYNLSLGPSFKDES---SNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDC--KENDAVLFFDG

Query:  ETFRLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPN
        E FRLE+LHR+V  L+ +R  DESA+ S   +          ++ PPV K               PV++  IDI  P               D+  D   
Subjt:  ETFRLERLHRAVTHLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPN

Query:  VSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHND-TDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSS---
                 +++D+E + +   E             +   +D+  DIN+PH  +  DDEIA VD + DE+ KG NAAEALRAQVNAE R++   SSS   
Subjt:  VSAPSPSPGMDNDDEHQDIDIDEIFGSVSSDDGNNVEEEKIDVGFDINVPHHND-TDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSS---

Query:  -----SSESGSGSSSGSSSGSSDSEHSDEDSVTS
             SSESG  SS   SS +S+S  S  +  T+
Subjt:  -----SSESGSGSSSGSSSGSSDSEHSDEDSVTS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAACGACAATAAAGAAGAGCCGAAGACCGCGCCCCAATCCGAACGGTGGTATAATCTATCACTCGGTCCATCCTTCAAGGACGAATCCTCCAACAAATTCTGCAC
TCTCCGATATGAATTTAAACCGGCGTCAATCGATAAAACGAAGCCGGGATCGTTGAAGAAGACCAAGGATAATAGGGTTACTGTTGAATTTCAGAACAATCAATTGGGGA
GACCCAATGTGGCGTTTGTTGGTAGTAGTGAGGATTGTAAGGAAAATGATGCCGTTTTGTTTTTTGACGGCGAGACATTCCGGTTGGAGCGGCTACATCGTGCAGTCACG
CATCTACGGCACGTTCGACAGGCGGATGAATCCGCTACCACGTCCATCACCACTTCTGTCCCCCATTCTTTGACGGTTCCGGAGCCTAGGTTATCTCCTCCGGTGGCTAA
AGTTACCAAACCAATGCATATGGGTCGAAGCAGTTTTCCTGTGGTGCCGGTGGAGGTGGAAAGAATAGATATTGGAGAGCCAGGAAATACAGGTGCAAGCTCTGTCGCTG
CTAGTAAAGAGGTTGCTGATTACACATCAGATCCACCAAATGTGTCTGCTCCCTCACCCTCTCCAGGCATGGATAATGACGATGAGCATCAAGATATAGATATCGATGAA
ATTTTTGGGTCTGTATCATCTGACGATGGAAACAATGTTGAAGAAGAAAAAATTGACGTTGGATTTGATATAAATGTACCACATCATAATGATACCGATGATGAGATTGC
TGATGTGGATGATAGTGGCGACGAAGCTCAGAAGGGACCTAATGCTGCAGAAGCCCTTAGAGCTCAGGTTAATGCAGAGGGTAGGGACAAGCAGACGTCGAGTTCGAGTA
GCAGCGAATCAGGCAGTGGTAGTAGCAGTGGAAGTAGCAGCGGCAGTAGCGACAGTGAACACAGCGATGAGGACTCAGTTACCTCAATTTGA

mRNA sequence

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ATTTCATTATGCTTTCGCATTTTATTCTCTCTTCATTTTCCAACTTACACAAAAAAGCTCAATATTTTCTTATGCTCCGTCTCATTCTCTCTCTAAAAATTAGCCCCCAC
CACAACCCTCTTTCTTACCTCTTCACGAGCTCCGGCGACACAAGAAGCGGCAGCTCGTCCACGAAATCCGGCGTCACCGTCTCCGTTGGGCGGCGGCGGAATCCGACGGC
GCAATCACGAGCGGCGGCGGTGCCCCGACGTTCGACGGCGGCAGATCCCAGCGGTGGGGCGGTGACCGTGCAGACCCGATAACCCCCTTCCAGCGATTCTTCTCCCGGAG
TGACATATCCGGCGATCCTCCGACGAACCAGATCTTGTATAATTTCAGACTCACGACAACTGGATTAGCGATTACCATCACTCCGGTGATTAAGCAACGTAGGTGAGTAA
GGTATTGCCACACGCTTCTGGATCCCAGAGTGTACTTTGCTTTGGTTATCCCTCTAAGCTCTCTCCAATAATGGCGAACGACAATAAAGAAGAGCCGAAGACCGCGCCCC
AATCCGAACGGTGGTATAATCTATCACTCGGTCCATCCTTCAAGGACGAATCCTCCAACAAATTCTGCACTCTCCGATATGAATTTAAACCGGCGTCAATCGATAAAACG
AAGCCGGGATCGTTGAAGAAGACCAAGGATAATAGGGTTACTGTTGAATTTCAGAACAATCAATTGGGGAGACCCAATGTGGCGTTTGTTGGTAGTAGTGAGGATTGTAA
GGAAAATGATGCCGTTTTGTTTTTTGACGGCGAGACATTCCGGTTGGAGCGGCTACATCGTGCAGTCACGCATCTACGGCACGTTCGACAGGCGGATGAATCCGCTACCA
CGTCCATCACCACTTCTGTCCCCCATTCTTTGACGGTTCCGGAGCCTAGGTTATCTCCTCCGGTGGCTAAAGTTACCAAACCAATGCATATGGGTCGAAGCAGTTTTCCT
GTGGTGCCGGTGGAGGTGGAAAGAATAGATATTGGAGAGCCAGGAAATACAGGTGCAAGCTCTGTCGCTGCTAGTAAAGAGGTTGCTGATTACACATCAGATCCACCAAA
TGTGTCTGCTCCCTCACCCTCTCCAGGCATGGATAATGACGATGAGCATCAAGATATAGATATCGATGAAATTTTTGGGTCTGTATCATCTGACGATGGAAACAATGTTG
AAGAAGAAAAAATTGACGTTGGATTTGATATAAATGTACCACATCATAATGATACCGATGATGAGATTGCTGATGTGGATGATAGTGGCGACGAAGCTCAGAAGGGACCT
AATGCTGCAGAAGCCCTTAGAGCTCAGGTTAATGCAGAGGGTAGGGACAAGCAGACGTCGAGTTCGAGTAGCAGCGAATCAGGCAGTGGTAGTAGCAGTGGAAGTAGCAG
CGGCAGTAGCGACAGTGAACACAGCGATGAGGACTCAGTTACCTCAATTTGATGGAAAAGAAGTTCTGGGTCTTAAACTTTGAGAATCAGTCTTTAAGGCAATCAAATAT
GCAAAAACTGTTCTCTACCGTTGGGCCTTACATTGTTCATACTTCATTTTTTATCGGGAGTTGATTTTAATACTTTAGAGAAACTCTTGAGGGTAATTTAATTGTAAAAT
AAAGTTTCAAATATGGTGATTTTGTTTCATGTGATTTTACTGATGCAGGTAAATTAAAGTTCACATCTGATGTTTCCAACCGCAATCGACTTCCTCT

Protein sequence

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MANDNKEEPKTAPQSERWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKDNRVTVEFQNNQLGRPNVAFVGSSEDCKENDAVLFFDGETFRLERLHRAVT
HLRHVRQADESATTSITTSVPHSLTVPEPRLSPPVAKVTKPMHMGRSSFPVVPVEVERIDIGEPGNTGASSVAASKEVADYTSDPPNVSAPSPSPGMDNDDEHQDIDIDE
IFGSVSSDDGNNVEEEKIDVGFDINVPHHNDTDDEIADVDDSGDEAQKGPNAAEALRAQVNAEGRDKQTSSSSSSESGSGSSSGSSSGSSDSEHSDEDSVTSI

MC11g1296 (gene) of Bitter gourd (Dali-11) v1 genome