; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC11g1447 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g1447
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationMC11:19318727..19320694
RNA-Seq ExpressionMC11g1447
SyntenyMC11g1447
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]9.46e-8994Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDR+LS+IGEEAA  LKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]4.69e-8994.67Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QTDRLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_008459037.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo]8.48e-9192.41Show/hide
Query:  VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS
        + ISI IIMNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS
Subjt:  VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS

Query:  GFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        GFASLNDHVEQRIVEFNQQA+QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  GFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_022155216.1 mediator of RNA polymerase II transcription subunit 22b-like [Momordica charantia]8.81e-94100Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_023545554.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo]1.34e-8894Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDR+LS+IGEEAA  LKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein2.27e-8994.67Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QTDRLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X21.31e-8894Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A1S3CAG5 mediator of RNA polymerase II transcription subunit 22a-like isoform X14.10e-9192.41Show/hide
Query:  VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS
        + ISI IIMNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS
Subjt:  VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS

Query:  GFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        GFASLNDHVEQRIVEFNQQA+QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  GFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X14.10e-9192.41Show/hide
Query:  VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS
        + ISI IIMNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS
Subjt:  VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFS

Query:  GFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        GFASLNDHVEQRIVEFNQQA+QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  GFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A6J1DR20 mediator of RNA polymerase II transcription subunit 22b-like4.27e-94100Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 223.8e-1536.5Show/hide
Query:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST
          +     E+ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST

Q54XB0 Putative mediator of RNA polymerase II transcription subunit 221.3e-1531.47Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E + ME R + M+ A + LLK++ ELKQ  I + F+++ + 
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQR
        V  + + F+++ E+T++ +  I EE + SLKELE  YY+S+ +
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQR

Q62276 Mediator of RNA polymerase II transcription subunit 223.8e-1536.5Show/hide
Query:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST
          +     E+ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b7.6e-5678.62Show/hide
Query:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI
        RI EF+Q+AE+T+RLL+RI ++A+ +LKELESHYYSS QR + +I
Subjt:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a6.4e-5575.68Show/hide
Query:  IMNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASL
        +MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASL
Subjt:  IMNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASL

Query:  NDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS
        NDHVEQRI EF+Q+AE+T+RLL+RI ++A+ SLKELESHYYSS QR++
Subjt:  NDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex5.4e-5778.62Show/hide
Query:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI
        RI EF+Q+AE+T+RLL+RI ++A+ +LKELESHYYSS QR + +I
Subjt:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex4.6e-5675.68Show/hide
Query:  IMNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASL
        +MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASL
Subjt:  IMNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASL

Query:  NDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS
        NDHVEQRI EF+Q+AE+T+RLL+RI ++A+ SLKELESHYYSS QR++
Subjt:  NDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGCCATTTCCATTTGTATTATTATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAG
AGTTGAAACCGATATAGCCAACATTGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAA
TGCGTGCCGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAG
CAAAGAATTGTGGAATTCAACCAGCAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTC
TTCAACACAGAGGACGAGTCAAAACATTCTGACATGA
mRNA sequenceShow/hide mRNA sequence
GTTGCCATTTCCATTTGTATTATTATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAG
AGTTGAAACCGATATAGCCAACATTGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAA
TGCGTGCCGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAG
CAAAGAATTGTGGAATTCAACCAGCAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTC
TTCAACACAGAGGACGAGTCAAAACATTCTGACATGATTAAAACCTAAGGTGTGAATTAAGTAGATTAGAGATATGATGTTGTTGGCTTCTAGACTCCCTTTGTAAATTA
TATGATAAGAATTATTTTGGGATAATTAAGGATATTAATAGAATAGTAAAGGATATATTAGTAATTAGTTAAAAGGTATTGGTCAGTATGGAATCGTTATAAATAAGAGT
GAGGAGGAAGAAATGAAGGTAGGGGCCGGGCAATTGTTCAAGAGAGGGAACGCCCAAGTACCTTAAATTACTTAGAGTTATTGTTGTTCTTCTATCTTTCAATCTATTTA
AGTATTTGGTTCCTAAATTCCTATCATTTTGCTAAATTGATATTTAAGTATTTGGTTCCTAAATTCCTATCATTATGCTAAATTACTTAGAGTTATTGTTGTTC
Protein sequenceShow/hide protein sequence
VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVE
QRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT