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MC11g1449 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC11g1449
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationMC11:19331954..19332109
RNA-Seq ExpressionMC11g1449
SyntenyMC11g1449
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036077.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.06e-1467.24Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

TYJ98884.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.06e-1467.24Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

XP_008441907.1 PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucumis melo]1.06e-1467.24Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

XP_022137435.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia]1.63e-1568.97Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CG+LKE EELIN+M IE      G  LAAC+VHGDIE GK+AAKKVMELKP  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

XP_038893557.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa hispida]6.41e-1670.69Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMELKP  TGAFV
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

TrEMBL top hitse value%identityAlignment
A0A1S3B4I2 pentatricopeptide repeat-containing protein At1g74600, chloroplastic5.14e-1567.24Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

A0A5A7T3B5 Pentatricopeptide repeat-containing protein5.14e-1567.24Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

A0A5D3BIJ5 Pentatricopeptide repeat-containing protein5.14e-1567.24Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

A0A6J1C6M8 pentatricopeptide repeat-containing protein At1g74600, chloroplastic7.91e-1668.97Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CG+LKE EELIN+M IE      G  LAAC+VHGDIE GK+AAKKVMELKP  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

A0A6J1KIC5 pentatricopeptide repeat-containing protein At1g74600, chloroplastic7.02e-1565.52Show/hide
Query:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        CG+LK  EELIN+M IE      G  LAAC+VHGDIE+GK+AA+KVMELKP  TGA+V
Subjt:  CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148201.1e-0645.45Show/hide
Query:  LKEGEELINSM------AIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        L+E  E+I SM       I G  ++ACR+HG++E+GK AAK+++EL+P   GA V
Subjt:  LKEGEELINSM------AIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

Q9CA56 Pentatricopeptide repeat-containing protein At1g74600, chloroplastic1.3e-0947.37Show/hide
Query:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        G+L+E E  IN+M I+      G  LAAC++HG++E+GK+AAKK +EL+P   GA++
Subjt:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

Q9SHZ8 Pentatricopeptide repeat-containing protein At2g220703.1e-0642.86Show/hide
Query:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAF
        G L+E +E I  M IE      G  L+ACRVH +I++GK+AA++++ L+P  +GA+
Subjt:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAF

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial5.3e-0642.11Show/hide
Query:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        G L+E + L+ SM +E      G  L  CR+HG++E+G+ AAKK++EL P  +G +V
Subjt:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331706.9e-0645.61Show/hide
Query:  GKLKEGEELINSMAIEG------FFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        G +K+ E LI SM++E         LAACRV GD E GK  A K++EL+P  + A+V
Subjt:  GKLKEGEELINSMAIEG------FFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

Arabidopsis top hitse value%identityAlignment
AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein9.6e-1147.37Show/hide
Query:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        G+L+E E  IN+M I+      G  LAAC++HG++E+GK+AAKK +EL+P   GA++
Subjt:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein2.2e-0742.86Show/hide
Query:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAF
        G L+E +E I  M IE      G  L+ACRVH +I++GK+AA++++ L+P  +GA+
Subjt:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAF

AT2G22410.1 SLOW GROWTH 13.8e-0742.11Show/hide
Query:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        G L+E + L+ SM +E      G  L  CR+HG++E+G+ AAKK++EL P  +G +V
Subjt:  GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein7.6e-0845.45Show/hide
Query:  LKEGEELINSM------AIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        L+E  E+I SM       I G  ++ACR+HG++E+GK AAK+++EL+P   GA V
Subjt:  LKEGEELINSM------AIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.9e-0745.61Show/hide
Query:  GKLKEGEELINSMAIEG------FFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
        G +K+ E LI SM++E         LAACRV GD E GK  A K++EL+P  + A+V
Subjt:  GKLKEGEELINSMAIEG------FFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCGGGAAACTGAAAGAGGGAGAAGAACTTATTAACAGTATGGCAATTGAAGGCTTCTTTCTTGCAGCTTGTAGAGTACATGGAGATATTGAAATTGGGAAAATAGCAGC
GAAAAAGGTGATGGAGTTGAAGCCATATGGTACTGGTGCTTTTGTG
mRNA sequenceShow/hide mRNA sequence
TGCGGGAAACTGAAAGAGGGAGAAGAACTTATTAACAGTATGGCAATTGAAGGCTTCTTTCTTGCAGCTTGTAGAGTACATGGAGATATTGAAATTGGGAAAATAGCAGC
GAAAAAGGTGATGGAGTTGAAGCCATATGGTACTGGTGCTTTTGTG
Protein sequenceShow/hide protein sequence
CGKLKEGEELINSMAIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV