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MELO.jh031803.1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO.jh031803.1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRGG repeats nuclear RNA binding protein A-like
Genome locationchr09:9785518..9787445
RNA-Seq ExpressionMELO.jh031803.1
SyntenyMELO.jh031803.1
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066625.1 H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa]3.13e-32100Show/hide
Query:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
TYK14187.1 H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa]1.07e-32100Show/hide
Query:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
XP_008465771.1 PREDICTED: uncharacterized protein LOC103503371 [Cucumis melo]8.94e-3298.11Show/hide
Query:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        CL+TNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
XP_022933029.1 RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita moschata]3.24e-1774.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
XP_023520985.1 RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita pepo subsp. pepo]3.24e-1774.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
TrEMBL top hitse value%identityAlignment
A0A1S3CR37 uncharacterized protein LOC1035033714.33e-3298.11Show/hide
Query:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        CL+TNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
A0A5A7VLJ4 H/ACA ribonucleoprotein complex subunit 1-like1.52e-32100Show/hide
Query:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
A0A5D3CQJ2 H/ACA ribonucleoprotein complex subunit 1-like5.18e-33100Show/hide
Query:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
A0A6J1EYL1 RGG repeats nuclear RNA binding protein A-like isoform X21.57e-1774.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
A0A6J1F3H7 RGG repeats nuclear RNA binding protein A-like isoform X11.58e-1774.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTCTTCTTCACTTGTTGGTGTTTGAGTACTAACAAGTTTTTGAGGCCTGCGGAAGAAGAGCGTCACTACACCCCTAGAGTCTGTGGTTCAAGGGGAGGATGTGG
TGGCAGCTCGATGAGCAATGTTCCAACCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
TCTCATTTTTCCTTCCTTTTCCTTTGCTCGCAGTTTCCTCCTCACGCTAACCTTTTTCCGTTCATCCTCTCGCAAATTCACATAGTTGGGTTTCACCACCATCAGATTTA
CATAGTTGGGTTTCACCACCGCCAGATTCACGTGGTTGGGTTTCTTTGTTGTTTTGTAATTTTTTGTTGCAACGTGTGGGGTTGTTTTTTTTTTTTCTTTTTTCTAATTT
CCTCTAAGTAATGCTTTGTTGTAATGTGTGGAGTGTGGACTGCCTCTCCACAATGTTTTGTTTCTTGTTTTTTCGTTTTCAATAATTTGACAAGTTTTAGAGTTTGGATT
TTTTTCAATGGAGAGGAATGAATGAGGGAAAAAGAAAACTGAGAGGTTGGGCGTGAGAGACAAGAAGGAAATTTTTTATTAAAGAAATTAGGAGAAAATGTTTTCTACAG
TTTTTTTTTTTTTTTTTTTTATATAGTTTGGTTGATGATCACATTTTTATAATGTTATGACTTATTTTAAAAAAATTATATTTGAATGTCACTATTAGTAATGCTAAGAT
CAAGCCTCAAATAGAAAATAAATTAAAAATTGAGTTTGATTTTTAGAACGAGGCGTTTGAATAGAAAAATAAAAAATAAAAGAACGCTAAACTCTATGGTTAGTTAGGAA
GTTAATGTTCTGTACTAAAAAAGATTCAAATTAGTTTACTTGCTTAAGTTAAAAGAAATTTTCTTGTTTTGGTATAATATTTTTCTATACCATTTTAAGTGTGGTCAAGA
TTAAAAAAATGAAATCTAATTAATATAACTAACAAAGGTCAAATGTCATTTTAGAGTATTAATAATTTATACATGAAACAAAGAAAATGTGTGTTTGTGGTCCTGTTACT
TACTTCTGCTGAACTGCATTTGAATATGTATTAAAATGTAATTATTTGAGAATAGTACTAAAATAAATAAATTGTGCTTTGATAAATTTTATTTGGCTTGTATCTTCCAG
TTTTCTTCAATCTCATGAATGATTGCAATGAAGTCATTCTTCAATTTGATGACCGTAGAATTCCAAAGAATGAATTTAATGCGTTAAAGTACTATTTATTCCAAACGATA
GAATTTGCTTCCAAATACATATTTATACAAAGCTTTGGTTCTAACTTCTAATTAGGCCCATATCAGCATAAAGGAGTTTTTATTTTGGTTTCCATACAACATTGTTTTGG
CCCTTCTAGACCCTGTAAAAGGTTAAATGACTAATGTTTTTCTTCTTCACTTGTTGGTGTTTGAGTACTAACAAGTTTTTGAGGCCTGCGGAAGAAGAGCGTCACTACAC
CCCTAGAGTCTGTGGTTCAAGGGGAGGATGTGGTGGCAGCTCGATGAGCAATGTTCCAACCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCCAAGTAAA
TTTCCCAAATAAATTTTCCCTTCCAAAACTATGTTTTCGATTTGGAGCAGGAAATCGATTAGAATAATATAGTCTCTTCTATATAAAATGATTCAATCCCTTTACCCAGC
TCTCTATTTAGTTTTCTTCCCAAAATGACAGGTTTATTCGGTGGTACCCTTCATTGACAAGACCATAACTCAATCAGAAATGAGATCAGGCTAAATGTGGTTATTAGTTC
GAAATTTGATCTTCAGTCACCGAAACAATAAGTAGAGATTATATATCTCATGCTCCACTCTTATACAAACGCATGCTTTGTATACTTCTATTCACGTGTTTCTATGTGAA
TGTCTAGAATCAAATCGTTTATAACGATTATGAAGTGGGTCGTATCCATAGACGAATTTATTAAGGGGTCAACGAAGGTACGTGCCCCTCACATTATTGATTTTTGTATT
TTAATATTAATTTTGAAGTGTTAGATTACAATATATACTAAATAATACTTTATTTTAA
Protein sequenceShow/hide protein sequence
MFFFFTCWCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK