; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO.jh102003.1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO.jh102003.1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Genome locationchr07:9617142..9620943
RNA-Seq ExpressionMELO.jh102003.1
SyntenyMELO.jh102003.1
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031853.1 pol protein [Cucumis melo var. makuwa]3.24e-23094.19Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+GYTVIWVVVDRLTKSAHFVP    H   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPM+GVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLVE
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLV+
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLVE

KAA0032302.1 pol protein [Cucumis melo var. makuwa]6.14e-22787.33Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+GYTVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLR CVLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVG FEILE+IGPVAYRLALPPSFAAVH+VFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLV    ++     A+W     +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

KAA0033485.1 pol protein [Cucumis melo var. makuwa]1.21e-22887.87Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+GYTVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEV DMVFLKVAPMKGVLRFAKKGKLSPRF+GPFEILERIGPVAYRLALPPSFAAVHDVFHISML+KYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLV    ++     A+W+    +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

KAA0040942.1 pol protein [Cucumis melo var. makuwa]1.05e-22187.6Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+G+TVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVG FEILERIGPVAYRLALPPSFA VHDVFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKL SREIPLV    ++     A+W     +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

KAA0047851.1 pol protein [Cucumis melo var. makuwa]8.21e-22689.22Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV    ++     A+W     +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

TrEMBL top hitse value%identityAlignment
A0A5A7SMN8 Pol protein2.97e-22787.33Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+GYTVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLR CVLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVG FEILE+IGPVAYRLALPPSFAAVH+VFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLV    ++     A+W     +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

A0A5A7SNM6 Pol protein1.57e-23094.19Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+GYTVIWVVVDRLTKSAHFVP    H   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPM+GVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLVE
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLV+
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLVE

A0A5A7SWE3 Pol protein5.87e-22987.87Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+GYTVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEV DMVFLKVAPMKGVLRFAKKGKLSPRF+GPFEILERIGPVAYRLALPPSFAAVHDVFHISML+KYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLV    ++     A+W+    +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

A0A5A7TBV4 Pol protein5.07e-22287.6Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTL+G+TVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVG FEILERIGPVAYRLALPPSFA VHDVFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKL SREIPLV    ++     A+W     +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

A0A5A7U2S5 Pol protein3.97e-22689.22Show/hide
Query:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK
        VKAPR+HP GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP    +   K   +Y  EIVRLHGVPVSI SDRDARFTSKFWK
Subjt:  VKAPRRHP-GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP--EIHLHRKGAAIY-DEIVRLHGVPVSITSDRDARFTSKFWK

Query:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
        GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT
Subjt:  GLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQT

Query:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
        TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV
Subjt:  TNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYV

Query:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF
        ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV    ++     A+W     +  Q+P  F
Subjt:  ADPTHVVDFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLV----EDEARARASWRATRSIPFQFPPTF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.5e-3935.49Show/hide
Query:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR
        G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  VP    I   +        ++   G P  I +D D  FTS+ WK         
Subjt:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR

Query:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI
        + FS  + PQTDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q +
Subjt:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI

Query:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        +  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

P0CT35 Transposon Tf2-2 polyprotein5.5e-3935.49Show/hide
Query:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR
        G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  VP    I   +        ++   G P  I +D D  FTS+ WK         
Subjt:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR

Query:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI
        + FS  + PQTDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q +
Subjt:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI

Query:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        +  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

P0CT41 Transposon Tf2-12 polyprotein5.5e-3935.49Show/hide
Query:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR
        G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  VP    I   +        ++   G P  I +D D  FTS+ WK         
Subjt:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR

Query:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI
        + FS  + PQTDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q +
Subjt:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI

Query:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        +  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.5e-3934.17Show/hide
Query:  PRRHPGLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFV---PEIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQL
        PR H GLLQPL +   +W  +SMDF+TGLP T     +I VVVDR +K AHF+     +   +    ++  I   HG P +ITSDRD R T+  ++ L  
Subjt:  PRRHPGLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFV---PEIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQL

Query:  ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG--EVGEQRMLGPELVQTTN
         LG +   S+A HPQTDGQ+ER  Q L  +LRA       +W  +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +   
Subjt:  ALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG--EVGEQRMLGPELVQTTN

Query:  AAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKG---KLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKY
        A   + + ++  AQ   ++  + RRK L   +GD V +          + KKG   K+   +VGPF ++++I   AY L L  S    H V ++  L+K+
Subjt:  AAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKG---KLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKY

Query:  VADPTHVVDFEPLQVSENL
        V  P      +P+  +E +
Subjt:  VADPTHVVDFEPLQVSENL

Q9UR07 Transposon Tf2-11 polyprotein5.5e-3935.49Show/hide
Query:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR
        G LQP+      WES+SMDFIT LP++  GY  ++VVVDR +K A  VP    I   +        ++   G P  I +D D  FTS+ WK         
Subjt:  GLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVP---EIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSKFWKGLQLALGTR

Query:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI
        + FS  + PQTDGQTER NQ +E +LR        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T    Q +
Subjt:  LDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKI

Query:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        +  + T   + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  RARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCGGACTTTGTCGGTAGATGCTGTGCCAGCGGTGAAGGCACCTAGGCGGCATCCGGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGGAAGTGGGAGAGT
GTGTCGATGGATTTTATTACGGGACTGCCCAAGACCCTAAGGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGTCGGCCCACTTCGTGCCGGAA
ATCCACTTACACCGTAAGGGGGCAGCTATATATGACGAGATTGTGAGACTACATGGAGTACCCGTATCCATCACTTCAGACAGAGACGCCCGTTTCACATCGAAG
TTCTGGAAAGGACTTCAACTTGCACTAGGTACAAGGTTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAA
GACATGCTCCGAGCCTGCGTACTAGAGTTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTTGCCTATAACAACAGCTACCAGGCTACTATCGGTATG
GCACCGTTCGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAATTAGTGCAGACGACCAAC
GCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCCCAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATG
GTCTTTCTGAAGGTTGCACCCATGAAGGGTGTTCTGAGGTTCGCGAAGAAGGGGAAGCTGAGCCCACGCTTCGTAGGGCCGTTCGAGATATTGGAGCGGATTGGC
CCCGTGGCTTACCGCTTGGCGCTACCCCCATCGTTTGCTGCAGTGCACGACGTATTCCATATCTCCATGCTGAGGAAATATGTCGCAGACCCAACACATGTGGTG
GACTTCGAGCCACTGCAGGTTAGCGAGAATCTGAGCTACGAGGAGCAGCCTGTCGAGGTCCTGGCAAGGGAGGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTG
GTAGAGGACGAGGCAAGGGCAAGGGCAAGCTGGCGAGCGACCCGAAGCATACCCTTTCAATTCCCTCCAACCTTCTTTAGTTTCAACTCCAAATCTTTTTCCATA
CCCTTTCCTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCGGACTTTGTCGGTAGATGCTGTGCCAGCGGTGAAGGCACCTAGGCGGCATCCGGGGTTGTTGCAACCCTTGAGTGTGCCAGGGTGGAAGTGGGAGAGT
GTGTCGATGGATTTTATTACGGGACTGCCCAAGACCCTAAGGGGCTACACGGTGATCTGGGTTGTGGTCGACAGACTCACGAAGTCGGCCCACTTCGTGCCGGAA
ATCCACTTACACCGTAAGGGGGCAGCTATATATGACGAGATTGTGAGACTACATGGAGTACCCGTATCCATCACTTCAGACAGAGACGCCCGTTTCACATCGAAG
TTCTGGAAAGGACTTCAACTTGCACTAGGTACAAGGTTGGACTTCAGCACGGCATTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAA
GACATGCTCCGAGCCTGCGTACTAGAGTTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTTGCCTATAACAACAGCTACCAGGCTACTATCGGTATG
GCACCGTTCGAGGCTCTGTATGGCAAGTGCTGTAGATCCCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGCCCCGAATTAGTGCAGACGACCAAC
GCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCCCAGAGCAGACAGAAGAGTTACGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATG
GTCTTTCTGAAGGTTGCACCCATGAAGGGTGTTCTGAGGTTCGCGAAGAAGGGGAAGCTGAGCCCACGCTTCGTAGGGCCGTTCGAGATATTGGAGCGGATTGGC
CCCGTGGCTTACCGCTTGGCGCTACCCCCATCGTTTGCTGCAGTGCACGACGTATTCCATATCTCCATGCTGAGGAAATATGTCGCAGACCCAACACATGTGGTG
GACTTCGAGCCACTGCAGGTTAGCGAGAATCTGAGCTACGAGGAGCAGCCTGTCGAGGTCCTGGCAAGGGAGGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTG
GTAGAGGACGAGGCAAGGGCAAGGGCAAGCTGGCGAGCGACCCGAAGCATACCCTTTCAATTCCCTCCAACCTTCTTTAGTTTCAACTCCAAATCTTTTTCCATA
CCCTTTCCTCAATAA
Protein sequenceShow/hide protein sequence
MWRTLSVDAVPAVKAPRRHPGLLQPLSVPGWKWESVSMDFITGLPKTLRGYTVIWVVVDRLTKSAHFVPEIHLHRKGAAIYDEIVRLHGVPVSITSDRDARFTSK
FWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTN
AAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVV
DFEPLQVSENLSYEEQPVEVLAREVKKLRSREIPLVEDEARARASWRATRSIPFQFPPTFFSFNSKSFSIPFPQ