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MELO.jh102167.1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO.jh102167.1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Genome locationchr08:14640388..14640657
RNA-Seq ExpressionMELO.jh102167.1
SyntenyMELO.jh102167.1
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039190.1 pol protein [Cucumis melo var. makuwa]2.50e-5389.89Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+ DRDARFTSKFWKGLQLALG RLDFST FHPQTDGQTERLNQ+LEDMLRACVLEFSGSW SHLHLM F+YNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

KAA0040164.1 pol protein [Cucumis melo var. makuwa]2.05e-5394.38Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+SDRDARFTSKFWKGLQLALG RLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW SHLHLM+FAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

KAA0053212.1 pol protein [Cucumis melo var. makuwa]4.55e-58100Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

KAA0063083.1 pol protein [Cucumis melo var. makuwa]2.00e-5394.38Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+SDRDARFTSKFWKGLQLALG RLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW SHLHLM+FAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

KAA0063116.1 pol protein [Cucumis melo var. makuwa]2.05e-5394.38Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+SDRDARFTSKFWKGLQLALG RLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW SHLHLM+FAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

TrEMBL top hitse value%identityAlignment
A0A5A7T7G5 Pol protein1.21e-5389.89Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+ DRDARFTSKFWKGLQLALG RLDFST FHPQTDGQTERLNQ+LEDMLRACVLEFSGSW SHLHLM F+YNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

A0A5A7T9L9 Pol protein9.94e-5494.38Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+SDRDARFTSKFWKGLQLALG RLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW SHLHLM+FAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

A0A5A7V4U5 Pol protein9.67e-5494.38Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+SDRDARFTSKFWKGLQLALG RLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW SHLHLM+FAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

A0A5A7V9J8 Pol protein9.94e-5494.38Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEI+RLHGVPVSI+SDRDARFTSKFWKGLQLALG RLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW SHLHLM+FAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

A0A5D3BMC0 Pol protein2.20e-58100Show/hide
Query:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
        MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY
Subjt:  MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.5e-1237.65Show/hide
Query:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W  H+ L+  +YNN+
Subjt:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS

P0CT35 Transposon Tf2-2 polyprotein6.5e-1237.65Show/hide
Query:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W  H+ L+  +YNN+
Subjt:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS

P0CT41 Transposon Tf2-12 polyprotein6.5e-1237.65Show/hide
Query:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W  H+ L+  +YNN+
Subjt:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein5.0e-1242.35Show/hide
Query:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS
        I   HG P +I SDRD R T+  ++ L   LG++   S+A HPQTDGQ+ER  Q L  +LRA V     +W  +L  ++F YN++
Subjt:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS

Q9UR07 Transposon Tf2-11 polyprotein6.5e-1237.65Show/hide
Query:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR        +W  H+ L+  +YNN+
Subjt:  IMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGAGATAATGAGACTGCATGGAGTACCTGTATCTATCGTTTCTGATAGAGATGCTCGTTTCACATCGAAGTTTTGGAAAGGACTTCAGCTTGCATTGGGCATGAG
GTTAGACTTTAGCACAGCTTTTCATCCTCAAACTGATGGTCAAACAGAGAGGTTGAACCAGATTTTGGAGGACATGCTGCGAGCCTGTGTGCTAGAGTTTTCAGGGAGTT
GGGGCTCCCATTTGCATTTGATGGACTTCGCTTATAATAACAGTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCGAGATAATGAGACTGCATGGAGTACCTGTATCTATCGTTTCTGATAGAGATGCTCGTTTCACATCGAAGTTTTGGAAAGGACTTCAGCTTGCATTGGGCATGAG
GTTAGACTTTAGCACAGCTTTTCATCCTCAAACTGATGGTCAAACAGAGAGGTTGAACCAGATTTTGGAGGACATGCTGCGAGCCTGTGTGCTAGAGTTTTCAGGGAGTT
GGGGCTCCCATTTGCATTTGATGGACTTCGCTTATAATAACAGTTATTAG
Protein sequenceShow/hide protein sequence
MTEIMRLHGVPVSIVSDRDARFTSKFWKGLQLALGMRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWGSHLHLMDFAYNNSY