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MELO3C000032 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C000032
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
Genome locationchr08:20431863..20432216
RNA-Seq ExpressionMELO3C000032
SyntenyMELO3C000032
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0005840 - ribosome (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0034457 - Mpp10 complex (cellular component)
GO:0019843 - rRNA binding (molecular function)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR002942 - RNA-binding S4 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041194.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa]1.8e-19100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

TYK23826.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa]1.8e-19100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

XP_004153543.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus]1.8e-19100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

XP_022980729.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita maxima]1.8e-19100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

XP_038880355.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida]1.8e-19100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

TrEMBL top hitse value%identityAlignment
A0A0A0KZG3 S4 RNA-binding domain-containing protein8.7e-20100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

A0A5D3BCP6 U3 small nucleolar ribonucleoprotein IMP38.7e-20100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

A0A5D3BRX0 U3 small nucleolar ribonucleoprotein IMP3-like isoform X18.7e-20100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

A0A5D3DJI4 U3 small nucleolar ribonucleoprotein IMP3-like isoform X18.7e-20100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

A0A6J1J025 U3 small nucleolar ribonucleoprotein protein IMP38.7e-20100Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

SwissProt top hitse value%identityAlignment
P32899 U3 small nucleolar ribonucleoprotein protein IMP36.2e-0747.17Show/hide
Query:  MGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGV+ T+  + +L ++++VS+ CRRRL  ++ RLK AE +++AV +IEQGH+R
Subjt:  MGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

Q01688 Putative 37S ribosomal protein S4-like (Fragment)7.6e-0551.28Show/hide
Query:  DRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        ++L+VS+FCRRRL  V+ RLK  E +  +V Y+E GH+R
Subjt:  DRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

Q3T0M3 U3 small nucleolar ribonucleoprotein protein IMP33.8e-1257.69Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A+HL+ AV ++EQGH+R
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

Q921Y2 U3 small nucleolar ribonucleoprotein protein IMP32.0e-1361.54Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MG++PTR SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+R
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

Q9NV31 U3 small nucleolar ribonucleoprotein protein IMP37.6e-1359.62Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A+HL+ AV ++EQGH+R
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR

Arabidopsis top hitse value%identityAlignment
AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein7.3e-1984.62Show/hide
Query:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR
        MGVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAEH +EAVTYIEQGH+R
Subjt:  MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGATACCAACCCGACAGAGCTTGAATTTATGTGATCGCCTGTCAGTGTCATCCTTTTGCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTT
GCCGAGCATTTGAGGGAAGCAGTTACATACATTGAACAAGGGCACATTAGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGATACCAACCCGACAGAGCTTGAATTTATGTGATCGCCTGTCAGTGTCATCCTTTTGCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTT
GCCGAGCATTTGAGGGAAGCAGTTACATACATTGAACAAGGGCACATTAGA
Protein sequenceShow/hide protein sequence
MGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR