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MELO3C000106 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C000106
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr05:21732938..21734564
RNA-Seq ExpressionMELO3C000106
SyntenyMELO3C000106
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]1.1e-4389.81Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRG
        H VVLVRG
Subjt:  HSVVLVRG

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]1.4e-4386.09Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGEGLRIYP
        HSVVLVRG  ++  P
Subjt:  HSVVLVRGEGLRIYP

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]1.8e-5193.97Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGEGLRIYP
        EHSVVLVRG  ++  P
Subjt:  EHSVVLVRGEGLRIYP

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.9e-4990.52Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGEGLRIYP
        EHS VLVRG  ++  P
Subjt:  EHSVVLVRGEGLRIYP

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.5e-5092.24Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGEGLRIYP
        E+ VVLVRGE ++  P
Subjt:  EHSVVLVRGEGLRIYP

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic6.7e-4486.09Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGEGLRIYP
        HSVVLVRG  ++  P
Subjt:  HSVVLVRGEGLRIYP

A0A443Q5G0 30S ribosomal protein S12, chloroplastic9.7e-4388.29Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGEGL
        HSVVL R E L
Subjt:  HSVVLVRGEGL

A0A443Q5I9 30S ribosomal protein S12, chloroplastic4.1e-4181.74Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGEGLRIYP
        HSVVLVRG  ++  P
Subjt:  HSVVLVRGEGLRIYP

A0A6A5N1Q8 Uncharacterized protein5.1e-4489.81Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRG
        H VVLVRG
Subjt:  HSVVLVRG

A0A6J1F0L1 uncharacterized protein LOC1114383948.7e-5293.97Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGEGLRIYP
        EHSVVLVRG  ++  P
Subjt:  EHSVVLVRGEGLRIYP

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic2.3e-2585.51Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

A4QJD9 30S ribosomal protein S12, chloroplastic2.5e-1988.68Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

A4QJV5 30S ribosomal protein S12-A, chloroplastic2.5e-1988.68Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

A4QJX7 30S ribosomal protein S12-B, chloroplastic3.8e-2079.03Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

Q3V510 30S ribosomal protein S12, chloroplastic2.5e-1988.68Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein3.0e-1246.84Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RG  ++  P
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

ATCG00065.1 ribosomal protein S12A1.8e-2088.68Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

ATCG00905.1 ribosomal protein S12C1.8e-2088.68Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

ATCG01230.1 ribosomal protein S12B1.8e-2088.68Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP

ATMG00980.1 Ribosomal protein S12/S23 family protein3.0e-1246.84Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RG  ++  P
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgaatgaaaacgtgactgaattggtcccggtcactcttcgggacggaatggaagaagggaggagattctcgaacgaggaaaaggatccaatgacttcgaaagaattgaa
cgaggagccgtatgaggtgaaaatctcacgtacggttctgtcgagtggcagtaagggtgacttatctgtcaacttttccactatcacccccaaaaaaccaaactctgcct
tacgtaaagttgccagagtacgcttaacctcgggatttgaaatcactgcttatatacctggtattggccataatttacaagaacattctgtagtcttagtaaggggggaa
gggttaaggatttacccggtgtga
mRNA sequenceShow/hide mRNA sequence
AGAGGGAAAAATAAGTAATAAaaatgacgtagaagagcccagattccaaatgaatgaaaacgtgactgaattggtcccggtcactcttcgggacggaatggaagaaggga
ggagattctcgaacgaggaaaaggatccaatgacttcgaaagaattgaacgaggagccgtatgaggtgaaaatctcacgtacggttctgtcgagtggcagtaagggtgac
ttatctgtcaacttttccactatcacccccaaaaaaccaaactctgccttacgtaaagttgccagagtacgcttaacctcgggatttgaaatcactgcttatatacctgg
tattggccataatttacaagaacattctgtagtcttagtaaggggggaagggttaaggatttacccggtgtgagatatcacattgttcgaggaaccctagatgctgtcgg
agtaaaggatcgtcaacaagggcgttctagtgcgttgtagattcttatccaagacttgtatcatttgatgatgccatgtgaatcgctagaaacatgtgaagtgtatggct
aacccaataacgaaagtttcgtaagggaactggagcaggctaccatgagacaaacaaaagatcttctttctaaagagattcgattcggaactattatatgtccaaggtcc
aatattgaaataatttcagaggttttccttgactttgtccgtgtcaacaaacaattcgaaatgcctcgacttttttagaacaggtccgagtcaaatagtaatgattcgaa
gcacctctttttacactatttcggaaacccaaggactcaatcgtatggatatgtaaaatacaggatttccaatcctagcaggaaagggagggaaacggatactcaattta
aagtgagtaaacagaattccatactcgatctcatagatacatatagaattctgtggaaagccgtattcgatgaaagtcgtatgtacggcttggagggagatctttcatat
ctttcgagatccaccctacaatatggggtcaAAAAGCCAAAATAAATGATTTTAGCCCTTTATAAAAAGAAAACTTATTCTTGAACCCCTTTCACGCTCATGTCCACGTC
GAGGTACTGCAGAAGAAAAAATTGCAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATCTGAAACATGGAAAAAAATCATTGGCTTATCA
AATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAA
GACGTGTAGGCGGATCAACTCATCAAGTTCCCATGAAATAGGATCCACACAAGGAAAGCACTGCCATTCGTTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAA
TATGGCTTTCAAATAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCA
CATTTTCGTTAatccatgaacaggatctatatagacacataggcccatggatccatacatctcgatcggaaaagaatcaatagaaaa
Protein sequenceShow/hide protein sequence
MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGE
GLRIYPV