; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C000332 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C000332
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr06:8114260..8115050
RNA-Seq ExpressionMELO3C000332
SyntenyMELO3C000332
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR007645 - RNA polymerase Rpb2, domain 3
IPR015712 - DNA-directed RNA polymerase, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ARC99429.1 RNA polymerase beta subunit [Heteromeles arbutifolia]4.2e-10277.34Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-------------------------------------------GIQEEQIVPARYRQEFLTIEWEQVH
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA+I                                           GIQEEQ+VPARYRQEFLTIEWEQVH
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-------------------------------------------GIQEEQIVPARYRQEFLTIEWEQVH

Query:  LRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRS
        LRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GK+IYTDTDKII SGNG TR IPLV+YQRS
Subjt:  LRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRS

Query:  NKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        NKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  NKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

YP_009430619.1 RNA polymerase beta subunit [Gynostemma cardiospermum]3.9e-10881.01Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA I                                             GIQEEQIVPARYRQEFLTIEWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLE QVARDSGVAAIAEHGGKIIYTDTDKI+FSGNGYTRRIPLVMYQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

YP_009514159.1 RNA polymerase beta subunit [Crataegus kansuensis]4.2e-10277.34Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-------------------------------------------GIQEEQIVPARYRQEFLTIEWEQVH
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA+I                                           GIQEEQ+VPARYRQEFLTIEWEQVH
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-------------------------------------------GIQEEQIVPARYRQEFLTIEWEQVH

Query:  LRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRS
        LRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GK+IYTDTDKII SGNG TR IPLV+YQRS
Subjt:  LRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRS

Query:  NKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        NKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  NKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

YP_009691512.1 RNA polymerase beta subunit [Sanguisorba sitchensis]3.2e-10277.13Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA+I                                             GIQEEQ+VPARYRQEFLT+EWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEHGGKIIYTDTDKII SGNG T  IPLV+YQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCM QK QV QGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

YP_009733671.1 RNA polymerase beta subunit [Begonia guangxiensis]3.2e-10276.74Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGI+VGLIGSLAIHA+I                                             GIQEEQ+VP RYRQEFLTIEWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL RSEKCIVGTGLERQVA DSG+ AIAEHGGKIIYT+TDKII SGNGYTR IPL+MYQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCM QKSQV QGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

TrEMBL top hitse value%identityAlignment
A0A286KTW8 DNA-directed RNA polymerase subunit beta1.9e-10881.01Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA I                                             GIQEEQIVPARYRQEFLTIEWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLE QVARDSGVAAIAEHGGKIIYTDTDKI+FSGNGYTRRIPLVMYQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

A0A291IAB3 DNA-directed RNA polymerase subunit beta1.9e-10881.01Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA I                                             GIQEEQIVPARYRQEFLTIEWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLE QVARDSGVAAIAEHGGKIIYTDTDKI+FSGNGYTRRIPLVMYQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

A0A2C9VZD6 DNA-directed RNA polymerase (Fragment)2.6e-10590.14Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARIGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSR
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA+IG+QEEQ+ PARYRQEFLTI WE+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSR
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARIGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSR

Query:  SEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLV
         EKCIVGTGLERQVA DSGV AIAEH GKIIYTD DKII SGNG T RIPLV YQRSNKNTCM QK Q+ +GKCIKKGQ+LADGAATVGGELALGKNVLV
Subjt:  SEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLV

Query:  AYMPWEGYNFEDA
        AYMPWEGYNFEDA
Subjt:  AYMPWEGYNFEDA

A0A5B9RDB2 DNA-directed RNA polymerase subunit beta1.6e-10277.13Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGINVGLIGSLAIHA+I                                             GIQEEQ+VPARYRQEFLT+EWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEHGGKIIYTDTDKII SGNG T  IPLV+YQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCM QK QV QGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

A0A6C0MCX5 DNA-directed RNA polymerase subunit beta1.6e-10276.74Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ
        IHPSHYGRICPIDTSEGI+VGLIGSLAIHA+I                                             GIQEEQ+VP RYRQEFLTIEWEQ
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI---------------------------------------------GIQEEQIVPARYRQEFLTIEWEQ

Query:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ
        VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL RSEKCIVGTGLERQVA DSG+ AIAEHGGKIIYT+TDKII SGNGYTR IPL+MYQ
Subjt:  VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQ

Query:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        RSNKNTCM QKSQV QGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYN EDA
Subjt:  RSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

SwissProt top hitse value%identityAlignment
A4QK97 DNA-directed RNA polymerase subunit beta1.2e-10274.23Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW
        IHPSHYGRICPIDTSEGINVGLIGSL+IHARI                                               GIQEEQ VPARYRQEFLTI W
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW

Query:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM
        E+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IPL+M
Subjt:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM

Query:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        Y+RSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDA
Subjt:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

A4QKI4 DNA-directed RNA polymerase subunit beta5.2e-10374.62Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW
        IHPSHYGRICPIDTSEGINVGLIGSL+IHARI                                               GIQEEQ VPARYRQEFLTI W
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW

Query:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM
        E+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IPL+M
Subjt:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM

Query:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        YQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDA
Subjt:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

A4QL98 DNA-directed RNA polymerase subunit beta4.0e-10375Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW
        IHPSHYGRICPIDTSEGINVGLIGSL+IHARI                                               GIQEEQ VPARYRQEFLTI W
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW

Query:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM
        E+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KIIFSGNG T  IPL+M
Subjt:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM

Query:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        YQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDA
Subjt:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

A4QLS5 DNA-directed RNA polymerase subunit beta1.2e-10274.23Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW
        IHPSHYGRICPIDTSEGINVGLIGSL+IHARI                                               GIQEEQ VPARYRQEFLTI W
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW

Query:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM
        E+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IPL+M
Subjt:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM

Query:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        Y+RSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDA
Subjt:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

P50546 DNA-directed RNA polymerase subunit beta5.2e-10374.62Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW
        IHPSHYGRICPIDTSEGINVGLIGSL+IHARI                                               GIQEEQ VPARYRQEFLTI W
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW

Query:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM
        E+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IPL+M
Subjt:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM

Query:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        YQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDA
Subjt:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA

Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta3.7e-10474.62Show/hide
Query:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW
        IHPSHYGRICPIDTSEGINVGLIGSL+IHARI                                               GIQEEQ VPARYRQEFLTI W
Subjt:  IHPSHYGRICPIDTSEGINVGLIGSLAIHARI-----------------------------------------------GIQEEQIVPARYRQEFLTIEW

Query:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM
        E+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IPL+M
Subjt:  EQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVM

Query:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA
        YQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYMPWEGYNFEDA
Subjt:  YQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCATTTCGCTTCGCGCCTTCATCCATCCGTCTCATTATGGACGCATTTGCCCAATTGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAATT
CATGCAAGGATTGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTGACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTTTCCC
TTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATGCGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGCTT
TCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATACC
GATACTGACAAGATCATTTTTTCGGGCAATGGATATACTCGAAGAATTCCATTAGTTATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAG
GTTCACCAGGGTAAATGCATTAAAAAAGGGCAAATTTTAGCGGACGGTGCTGCTACAGTTGGTGGTGAACTTGCTTTGGGCAAAAACGTATTAGTAGCTTATATG
CCATGGGAAGGTTACAATTTTGAAGATGCG
mRNA sequenceShow/hide mRNA sequence
TAGTCATTTCGCTTCGCGCCTTCATCCATCCGTCTCATTATGGACGCATTTGCCCAATTGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCATTAGCAA
TTCATGCAAGGATTGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATACCGTCAAGAATTCTTGACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTTTC
CCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATGCGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGC
TTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATA
CCGATACTGACAAGATCATTTTTTCGGGCAATGGATATACTCGAAGAATTCCATTAGTTATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCC
AGGTTCACCAGGGTAAATGCATTAAAAAAGGGCAAATTTTAGCGGACGGTGCTGCTACAGTTGGTGGTGAACTTGCTTTGGGCAAAAACGTATTAGTAGCTTATA
TGCCATGGGAAGGTTACAATTTTGAAGATGCG
Protein sequenceShow/hide protein sequence
VISLRAFIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL
SRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNFEDA