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MELO3C000962 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C000962
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationchr04:2204592..2204777
RNA-Seq ExpressionMELO3C000962
SyntenyMELO3C000962
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB75352.1 RNA-binding protein 24 [Morus notabilis]2.8e-2795.16Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTD+MR+YFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

XP_004136431.1 RNA-binding protein 38 [Cucumis sativus]4.3e-2898.39Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQM+TYFEQFGDILEAVIITDKNTSKSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

XP_010098613.2 RNA-binding protein 38 [Morus notabilis]2.8e-2795.16Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTD+MR+YFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

XP_021900563.1 RNA-binding protein 38 isoform X1 [Carica papaya]1.4e-2693.55Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPT++MR YFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

XP_021900566.1 RNA-binding protein 38 isoform X2 [Carica papaya]1.4e-2693.55Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPT++MR YFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

TrEMBL top hitse value%identityAlignment
A0A0A0LGV2 RRM domain-containing protein2.1e-2898.39Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQM+TYFEQFGDILEAVIITDKNTSKSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

A0A2Z6PHN2 RRM domain-containing protein3.3e-2696.61Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        YPHYRSQFGDTTFTKVFVGGLAWETPTD+MRTYFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

A0A6J1F8X9 RNA-binding protein 38-like5.7e-2696.61Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        YPHYRSQFGDTTFTKVFVGGLAWETPTD+MR YFEQFGDILEAVIITDKNTSKSKGYGF
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

G7KBA8 Putative nucleotide-binding alpha-beta plait domain-containing protein3.3e-2696.61Show/hide
Query:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        YPHYRSQFGDTTFTKVFVGGLAWETPTD+MRTYFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

W9R7P9 RNA-binding protein 241.4e-2795.16Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        MANYPHYRSQFGDTTFTKVFVGGLAWETPTD+MR+YFEQFGDILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

SwissProt top hitse value%identityAlignment
Q5ZJX4 RNA-binding protein 382.4e-1366Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGF
Subjt:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

Q62176 RNA-binding protein 384.1e-1366Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGF
Subjt:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

Q7T3I7 RNA-binding protein 384.1e-1366Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T+KS+GYGF
Subjt:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

Q9H0Z9 RNA-binding protein 384.1e-1366Show/hide
Query:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        DTTFTK+FVGGL + T    +R YFE FGDI EAV+ITD+ T KS+GYGF
Subjt:  DTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

Q9M1S3 Probable RNA-binding protein ARP11.4e-1367.31Show/hide
Query:  FGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGF
Subjt:  FGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.3e-2167.21Show/hide
Query:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        + + +  S FGDTTFTKVFVGGLAWET ++ +R +F+Q+GDILEAV+ITDKNT +SKGYGF
Subjt:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.3e-2167.21Show/hide
Query:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        + + +  S FGDTTFTKVFVGGLAWET ++ +R +F+Q+GDILEAV+ITDKNT +SKGYGF
Subjt:  ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.1e-2580.65Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        M+N  +YRS FGDTT TKVFVGGLAWETPTD+MR YF+QFG+ILEAVIITDK T KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.3e-2682.26Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        M+   +YRS FGDTT+TKVFVGGLAWETPTD+MR YFEQFG+ILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF

AT1G78260.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.3e-2682.26Show/hide
Query:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF
        M+   +YRS FGDTT+TKVFVGGLAWETPTD+MR YFEQFG+ILEAVIITDKNT KSKGYGF
Subjt:  MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGACACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCGAACTTATTT
TGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGCTATGGATTC
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGACACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCGAACTTATTT
TGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGCTATGGATTC
Protein sequenceShow/hide protein sequence
MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYFEQFGDILEAVIITDKNTSKSKGYGF